Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01452 ATGAAGAAGGACACCTCCATGAATTCTAACTTAAAGCTTATTCTACCTCCTCCCGACGAACTTACCTTTGGCTTCATAACTCGAAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAAGGACGGCGTGCGGATTGTTTCTCAAACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACACCCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATTGGGAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTCGGTTGGTTGCTAAGGAGCTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTCTGTTATCAAATCTTCTATGACAATGGTGCCATTTTCATTATCTTGGAATACATGGATGGTGGATCGCTTGCAGATCTTCTGAAAAAAGTTGAAACAGTCCTTGAGCCGTATCTTGCAGCCATTTGTTACCAGGTACTAAACGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTATTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTAAGCGCTATACTGGCGAATACGGCCGATCAAGCAAATTCTTTTGTTGGCACATATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATACGACAACAAAAGTGACATATGGAGTTTGGGTTTGATTTTGCTCGAATGTGCGACGGGTCAATTTCCATATGCTCCACCAGATAAAGAAAAAGGATGGGAAGGCTTTTTTGATGTTATGGTGGCCGTAGTAGAACTAGCATCGCCTTCTGCGCCTGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAAGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATAAAAAAGTTCGAGAACTTCGATGTAGATCTTGCAGCTTACTTCAAAGATGCTGGTTCTCCATTGGCAACCTTCTAA 1062 41.43 MKKDTSMNSNLKLILPPPDELTFGFITRSGTFTDGDLLVNKDGVRIVSQTDDESPPPIKPSDTHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETVLEPYLAAICYQVLNGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILANTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLILLECATGQFPYAPPDKEKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFENFDVDLAAYFKDAGSPLATF* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18365650 18368016 - Chy5G104980.1 Chy05g01452 227679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01452 353 SUPERFAMILY Protein kinase-like (PK-like) 55 334 IPR011009 -
Chy05g01452 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Chy05g01452 353 CDD PKc_MAPKK_plant_like 68 334 - -
Chy05g01452 353 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Chy05g01452 353 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 352 - -
Chy05g01452 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Chy05g01452 353 SMART serkin_6 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01452 353 PANTHER MAP KINASE KINASE 5 352 - -
Chy05g01452 353 Pfam Protein kinase domain 72 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01452 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01452 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01452 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101206374 707.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g01249 Chy05g01452 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01452 Chy-Chr5:18365650 Chy07g00059 Chy-Chr7:518162 3.22E-44 dispersed
Chy01g01557 Chy-Chr1:21538382 Chy05g01452 Chy-Chr5:18365650 1.94E-35 transposed
Chy01g02257 Chy-Chr1:26997923 Chy05g01452 Chy-Chr5:18365650 1.79E-28 transposed
Chy04g00712 Chy-Chr4:8666146 Chy05g01452 Chy-Chr5:18365650 8.39E-67 transposed
Chy04g01430 Chy-Chr4:20944512 Chy05g01452 Chy-Chr5:18365650 1.43E-73 transposed
Chy05g01408 Chy-Chr5:18086590 Chy05g01452 Chy-Chr5:18365650 6.07E-150 transposed
Chy08g00040 Chy-Chr8:1427312 Chy05g01452 Chy-Chr5:18365650 1.54E-34 transposed
Chy12g01379 Chy-Chr12:17994198 Chy05g01452 Chy-Chr5:18365650 1.11E-79 transposed
Chy02g01249 Chy-Chr2:9102360 Chy05g01452 Chy-Chr5:18365650 4.19E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01452 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.1e-125 445.7
Chy02g01249 CCT 28 309 MAP Kinase Kinase Gene Family AT4G26070 70.9 3.1e-116 415.2
Chy05g01408 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.4 3.8e-106 381.7
Chy02g01249 CCT 1 309 MAP Kinase Kinase Gene Family AT4G29810 70.4 1.5e-126 449.5
Chy05g01452 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 1.1e-118 423.3
Chy05g01408 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 2.1e-109 392.5
Chy04g01430 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.9 4.1e-226 780.8
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.5 2.2e-136 482.3
Chy12g01379 . 49 316 MAP Kinase Kinase Gene Family AT1G51660 55.6 1.3e-83 307.0
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 63.7 2.1e-128 455.7
Chy12g01379 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.5 3.2e-84 308.9
Chy05g01408 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-168 586.6
Chy05g01452 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.5e-108 389.8
Chy02g01249 CCT 7 345 MAP Kinase Kinase Gene Family AT5G56580 55.0 9.8e-105 377.1
Chy12g01379 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.8e-107 386.0
Chy12g01379 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.1e-80 297.0
Chy12g01379 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.7 3.8e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71293 PF00069 Pkinase 1.40E-69 CL0016 Chy PK