Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01469 ATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTGCTTCACTTTTCCTCCAGACGACTGAAGATGTTGCAAGAGCCGTGGCTGCTGCAGCTGCTGCCGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTCATATATTCTTCAAAAGACGACGAGGGCGGCAGTCCACTACAGAGATTGCAGCGTCAAGTTAATAAAGTGCTCAAAGGGTTTTCTAGTCCTCCTCAAGTCAAAACTGCAGGAACTTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCCAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGACAGTATGCTGCAAAGAGGTCAGAAGGTTCCGGGAGACTCCGAACTGCTCTTAATAATAGTCAGAATCAATCCCGGGTGGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCCGAGAAACAGTTACCACTCAAGTACAAGGACCTTCTTTCGTTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAATGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTATGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGAAAAACCATCTTCCCACTCATCCTTGAGCCGTTACTTACTAACCACACGCAGATGCTACTGCATCCTTTCTCGGTTGCCATTCTTCGAATTACATTTTGGTGTGTTGAATAGCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGAATCCACAGAGAATTTGAGCAATGATGAAGATTTGGTGGAAGACATGGGTTCCATGACTTTAGATCAGAGTGCAGCTGAAGACATGGATGAGGGAAAAGAGGAATATTCTCAAAGAATGGGTGATGAAAATCATGTTGACCATCAAGTGCTAGATGGAAATTTTCAATGTCTGAGAAAGGGTGTTAGCAACGATATAGTTGCCAAACTTGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTGTTACTGTACATAAGGAAAATCATGATATTGAAGTTGATGATTTTACAAGCAACAAGCAGGCAATTGACAGGCGTTTACCGAATGCTGTTCTACCTCTCTTCCGTTATTATCAATATGAAAGCTCTGAATCATCGTCAAGTTTTCAGGGGTCTCCGAGTGAAGATAGAAATTTCAGAAGTGACGCCGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCACGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGTTCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGAGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCTGATGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGCTCGACCATTGATCCAAGATCATGCAGTACAAGTCTCGAATTAGCAGAGGCACACGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTGCGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGGTTGTTTGTTCCAATCTGGGTATCCTATCAGCTTCGGTTTTATCGATTATTCCTATGATTCGTCCCTACCAGTGGCAAAGCTTGTTGATGCCAGTGTTACCGAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAGTCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAGAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCGTATCATGCAGAGCTAGTTGGAGAGAGCTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAGGCCGCCAAGGGTTTCCTAAAAGTGCTAAGATTATACTTGGACTCCCTCTGCTCTAACCTCCGTTCACATACAATTACTAATGTACAATCGAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCGTGATCGGCCATTTTTGAAGTTGCCTTTATTTTTTATGGATTTCCGTAGAGATGTCAGAGACAAGGGGTGGCAGGCAGAAGCAGAAAATGCAAAGAAGATTCTGCAGCTCAATGGTCCCTCAAATAAATATACCTATTCTACTCTGAACTCTCCCTCTAATAAAACTAAAAACCATTTCTCCACTCTCCTCTGGAAAAAAACAATGAGCGCACGAAACAGGTTTCCGTTCACTGCAGCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCTGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAAACGTTCAAGAAAGCCTGTGGAACAAGTTTTGAAAACAACTCCCCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACCCATCCCCATCCCCACCCTTTTCACTATCAAAATCCCTCTGCTTCTTCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGAGAAGGAAGAAGATTCCTTTGTGAGGGAACAACATTCTGGAAACATGAGAGGTTTCTCTGGTTCGTCTATGGATGATTCGTGGCAGTTAACTCCTCTGACAATGAGTTGCTCTTCCTCGTCCTCCAGATACAAGAACTGCTCTGCTTTGCAAGGTGATTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAAGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTACTCCTAACACAGACTCCTCCATCTTCAGTTCCAATAAGCGTAATGAAAACTGA 3465 43.61 MDKNEETGSPGWGASLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKRSEGSGRLRTALNNSQNQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKPSSHSSLSRYLLTTRRCYCILSRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNDEDLVEDMGSMTLDQSAAEDMDEGKEEYSQRMGDENHVDHQVLDGNFQCLRKGVSNDIVAKLDPEPEVVTAKIESVTVHKENHDIEVDDFTSNKQAIDRRLPNAVLPLFRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSTDLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHLMEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAHGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVVVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKLPLFFMDFRRDVRDKGWQAEAENAKKILQLNGPSNKYTYSTLNSPSNKTKNHFSTLLWKKTMSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKKRSRKPVEQVLKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQNPSASSHPSLLPDYRRNRYVYGEKEEDSFVREQHSGNMRGFSGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFGKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSTPNTDSSIFSSNKRNEN* 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18431800 18440612 - Chy5G105150.1 Chy05g01469 227696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01469 1154 Pfam DENN (AEX-3) domain 574 672 IPR001194 -
Chy05g01469 1154 MobiDBLite consensus disorder prediction 1112 1154 - -
Chy05g01469 1154 SMART QLQ_2 844 880 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy05g01469 1154 MobiDBLite consensus disorder prediction 944 989 - -
Chy05g01469 1154 Gene3D - 569 735 IPR043153 -
Chy05g01469 1154 MobiDBLite consensus disorder prediction 442 475 - -
Chy05g01469 1154 ProSiteProfiles WRC domain profile. 916 960 IPR014977 -
Chy05g01469 1154 MobiDBLite consensus disorder prediction 961 986 - -
Chy05g01469 1154 ProSiteProfiles Tripartite DENN domain profile. 149 800 IPR037516 -
Chy05g01469 1154 Pfam QLQ 845 878 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy05g01469 1154 MobiDBLite consensus disorder prediction 1122 1154 - -
Chy05g01469 1154 Pfam uDENN domain 167 244 IPR005113 -
Chy05g01469 1154 Gene3D - 104 310 - -
Chy05g01469 1154 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 1 777 - -
Chy05g01469 1154 SMART DENN_cls 274 672 IPR001194 -
Chy05g01469 1154 ProSiteProfiles QLQ domain profile. 845 880 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy05g01469 1154 MobiDBLite consensus disorder prediction 32 57 - -
Chy05g01469 1154 Pfam WRC 917 959 IPR014977 -
Chy05g01469 1154 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 1 777 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01469 - - - csv:101208952 1495.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00818 Chy-Chr2:5174256 Chy05g01469 Chy-Chr5:18431800 3.67E-35 dispersed
Chy04g00698 Chy-Chr4:8385309 Chy05g01469 Chy-Chr5:18431800 1.98E-46 dispersed
Chy05g01469 Chy-Chr5:18431800 Chy06g00228 Chy-Chr6:1494583 1.50E-14 dispersed
Chy05g01088 Chy-Chr5:15363709 Chy05g01469 Chy-Chr5:18431800 8.41E-06 transposed
Chy11g00519 Chy-Chr11:5699392 Chy05g01469 Chy-Chr5:18431800 7.31E-52 transposed
Chy11g01874 Chy-Chr11:24946179 Chy05g01469 Chy-Chr5:18431800 5.26E-65 transposed
Chy02g01265 Chy-Chr2:9244498 Chy05g01469 Chy-Chr5:18431800 7.99E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g89 Blo01g00569 Blo16g00962 . Bda11g01019 . Bpe02g02179 . . . . Cma05g01422 . Car05g01338 . . . . . . . . . . . . . . . . . . . . . Cone7ag0787 . Csa02g00018 Chy05g01469 . . . . . . Bpe13g01231 Bma01g00258 Bma06g00898 . Cmo05g01418 . . . . . . . Bhi06g01584 Tan08g0016 . . . . . . . . . . . . Lsi11g00160 . . Cme05g02071
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01955 . 1 336 GRF Transcription Factor Family AT2G36400 50.6 5.1e-54 208.8
Chy05g01469 . 843 950 GRF Transcription Factor Family AT3G13960 73.1 5.3e-43 172.2
Chy02g01265 . 8 133 GRF Transcription Factor Family AT3G13960 59.5 2.7e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003568 1 5 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18052 PF02141 DENN 7.30E-23 CL0330 Chy TF