Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01480 ATGAAAGCTCCCTCAAATGGGTTTCTAGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTAGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTACACAATGTCACATTACATGCTGATCCTGAGACTGATGAGGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTGTTGGCATCTGATATTGGCCTCAAGCAAAGTAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCCGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAACGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTGAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCTGCTCTATCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCGGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCCAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGAGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATCAGCGACATGGATTCTGTAAGATGGAAAAATTCACAGTGGCGGAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTCTACATATGTCCGCCTCCGTTCTTCAGACCCAAATTCCCTAAACAACAAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGCCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCACAATCTGGAATTTTGCCATCTATGGTTGCGCCTAGTGCTCTGCATGGAACTCTTACCAATGATGACCCGTCCAAATTATTGAGTTTTCAAGCACCAGTACTTTCTTCAACAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAATTGCCTCCAACTACGTGGTCCCAACAGCAGCAGCTGCAGCAATTATTACAAGTTTCTGCAAGCCAACAGTTACAGCAGCAGCAATTGCCACCCCAGGAACAACAGCAGCAACAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCACAACAGTCACAGCGGCAACAGCAGACCTCACAATCCGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTATGCAACAACCGCTTGTATACTCTCAGCTACAACAGCAGCAATTGCTTGCAAGCAATATTCAATCCCATCAAACTAGTCAACCATCTAATAAGAATTCATTTCAGACTACATCTTTATCAGAAGAAACACAGCTTCAGCCACAAATAGAGCAGCAATCTAGCCTTCTTTCGAGACAACAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAAAGCACAACAGCAGCCTCAAGTTCAGCAATTTTCACAGCCAATCCCGACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTCCAGCAACAACACCAGCAGCAGCCATTGCTCTCCCCGGCTAGCCCATTATTACCGCCTCAGCTGCTACAGCAGCAACACATTCATCCGCAGAACCAGCAGTTACCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACTTAATAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCCATAACCCAATCCCATAGTCAATTCAAACCAACCACGGCAATTAGAGCATACTCTGGACTGACTGAAGGAGATGCTCCATCTTGTTCTACCTCACCTTCCACTAATAATTGCCCAGTTCCTGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCTGGCACAGGAGCTACATAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTAAAATATAAAGGCACTGTTCCTGATCAGTTAGAAGGGTCTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGGCTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAACATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCGACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACATAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGCATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACACGCTACAAAGGATATGACGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGACAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGATGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCTGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACGGATAGTGGAAATGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCATCGTTCAATCGATGA 3309 44.82 MKAPSNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQQGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSTNLQFSKANQQNQVGQLPPTTWSQQQQLQQLLQVSASQQLQQQQLPPQEQQQQQQLQQLPQQQQLQSQQSQRQQQTSQSVLLNNSVTAANHLPNPSMQQPLVYSQLQQQQLLASNIQSHQTSQPSNKNSFQTTSLSEETQLQPQIEQQSSLLSRQQQPTQFQQAPLQLLQQSLSQKAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQHQQQPLLSPASPLLPPQLLQQQHIHPQNQQLPPLPLPNQQQFNTSGGSLQTEKLNSNGFASLGLMQSQQVPITQSHSQFKPTTAIRAYSGLTEGDAPSCSTSPSTNNCPVPVSNLLNKNQQGAATLGGDSVVEPATNLAQELHSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEGSSSGTSYCLDAGTIQQALPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNINEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR* 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18553235 18570094 + Chy5G105260.1 Chy05g01480 227707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01480 1102 PANTHER AUXIN RESPONSE FACTOR 19 1 1090 - -
Chy05g01480 1102 CDD B3_DNA 125 226 IPR003340 GO:0003677
Chy05g01480 1102 Gene3D - 289 360 - -
Chy05g01480 1102 MobiDBLite consensus disorder prediction 582 624 - -
Chy05g01480 1102 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy05g01480 1102 MobiDBLite consensus disorder prediction 1083 1102 - -
Chy05g01480 1102 Gene3D - 124 227 IPR015300 -
Chy05g01480 1102 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Chy05g01480 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1090 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy05g01480 1102 Gene3D - 970 1064 - -
Chy05g01480 1102 SUPERFAMILY CAD & PB1 domains 988 1053 - -
Chy05g01480 1102 SMART B3_2 126 228 IPR003340 GO:0003677
Chy05g01480 1102 ProSiteProfiles PB1 domain profile. 975 1068 IPR000270 GO:0005515
Chy05g01480 1102 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Chy05g01480 1102 Pfam AUX/IAA family 972 1061 IPR033389 -
Chy05g01480 1102 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Chy05g01480 1102 MobiDBLite consensus disorder prediction 702 728 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01318 Chy05g01480 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00116 Chy-Chr2:835963 Chy05g01480 Chy-Chr5:18553235 1.15E-29 dispersed
Chy04g00433 Chy-Chr4:3874087 Chy05g01480 Chy-Chr5:18553235 1.48E-37 dispersed
Chy05g00847 Chy-Chr5:12113720 Chy05g01480 Chy-Chr5:18553235 0 dispersed
Chy05g01480 Chy-Chr5:18553235 Chy07g01133 Chy-Chr7:16265895 2.58E-15 dispersed
Chy05g01480 Chy-Chr5:18553235 Chy12g00362 Chy-Chr12:3963674 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18053 PF02309 AUX_IAA 4.90E-09 CL0072 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01480 K14486 - csv:101210917 1761.89