Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00013 ATGGAAACTGGAACCCAGACCCAAAGATCATCAGGGAGAGGGGAGGATTATGAAGTTCAAGTGTCGTTCCACCTCTCAAATGATCAACCCCACATCCACGAAATGGGATTTGTGCAGTTGGAAGAGCACAGCCAGGTTTTGAGCTTCTTGGCACCCAACAACAACAACAACGCCACCAATATGCCACCTCCTCCCTTTACTACTACTTCTCCTCACTCCAACATCCTCCCTCGACCACCTTCTTGGACTAATCACCAGCTGCCCGGAACACTGGATCCCAAGCCCGGTAACGACGAAAACTGCACGGCTACTGCTACTGATGCCACCAATTCATGGTGGAGAAACACAAACGCCGATAAGAGTAAGGTGAAGGTAAGGAGAAAGCTGAGAGAGCCACGTTTCTGTTTTCAGACAAGAAGCGATGTTGATGTGCTGGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTAGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACTTACGAAGGTAGACACAACCACACTCCTTGTGATGACTCCAATTCTTCGGAGCACGAACCCTTTACATCCTTCTGA 660 48.79 METGTQTQRSSGRGEDYEVQVSFHLSNDQPHIHEMGFVQLEEHSQVLSFLAPNNNNNATNMPPPPFTTTSPHSNILPRPPSWTNHQLPGTLDPKPGNDENCTATATDATNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSEHEPFTSF* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 100402 102279 + Chy6G105410.1 Chy06g00013 227722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00013 219 ProSiteProfiles WRKY domain profile. 140 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g00013 219 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g00013 219 MobiDBLite consensus disorder prediction 200 219 - -
Chy06g00013 219 SMART WRKY_cls 145 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g00013 219 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 24 215 - -
Chy06g00013 219 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g00013 219 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 215 IPR044810 GO:0003700
Chy06g00013 219 Gene3D WRKY domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01002 Chy-Chr2:6714319 Chy06g00013 Chy-Chr6:100402 1.67E-45 dispersed
Chy06g00013 Chy-Chr6:100402 Chy09g00217 Chy-Chr9:1819693 2.11E-19 dispersed
Chy06g00013 Chy-Chr6:100402 Chy06g00766 Chy-Chr6:5293301 2.35E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18055 PF03106 WRKY 1.70E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00013 - - csv:101216931 445.662