Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00018 ATGAAGAGGATTCCAGAGTCAAAAGCACTACCATTATTTCTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCAGGAAAATTTTGTGTTTTGGATGATATACCGAAAGCACATGTGGCCTCAGCCAAGCAAGTTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTTGGAAGATCAATTGGGCAAGGATTTCAAGATTCAGAAATTGCACCTGTACGGACATCGAAGGGAAAATCCTCTTTTTTGGGGCAGGAAGACGCTAAGCGTGATGTCACTTTAAAGGGTAGTGGTTCTTTGATTGAGGAGGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCCGTTGATATGGATCTAATGAGAACTGTTTATGTACCCATTGGGCAAAATAAGCCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTAAAGGGCCCTTTTCTGGAAGATCTTTCAATCAGGGTTCCACCCAAGAAACCAAGCCCTGCTGTTCTCTCTCCTGCAGAAAGCTTGGTGGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCCTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGCGTTTGGGATGCTTCTTTGCCACCAAGTGGCAATGTAAGTCCACACAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACTTATCGAAGTGATGGAATGGTTAGTATTGAACGGAACTGTGAGAGTGCAAAAGGAAGCATGAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTGTTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGACGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCGAGGTGGAAAGCCATCCTTGCTATTCGAGCAAGAGATGGAATATTGGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGTTGTGGTGATATTGGCAGTGTTTATCTCTCAGAGCTAAGTGGAACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAAACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAAACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCGGGGAAACACTTCTCTGAGTATGCTGCGAGGTATGTTAAATACTTTACTGAGAAAAATACCGTGAACGGCAGTTCTCTAGTGACTCCTTTGGTGCTTTGCCTGCTAGCAATTCTTCCTTCACTTCCACAGTTTTCAATTAATTTTAAACCACATGCTTTTCTCGATCTTAATGTCTAG 1458 44.86 MKRIPESKALPLFLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQVGHWSNMHSAKVRDVGRSIGQGFQDSEIAPVRTSKGKSSFLGQEDAKRDVTLKGSGSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARYVKYFTEKNTVNGSSLVTPLVLCLLAILPSLPQFSINFKPHAFLDLNV* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 114943 116400 - Chy6G105460.1 Chy06g00018 227727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00018 485 Pfam Protein kinase domain 335 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00018 485 MobiDBLite consensus disorder prediction 275 307 - -
Chy06g00018 485 PANTHER FLIPPASE KINASE 1-RELATED 44 438 - -
Chy06g00018 485 SUPERFAMILY Protein kinase-like (PK-like) 316 439 IPR011009 -
Chy06g00018 485 Gene3D Phosphorylase Kinase; domain 1 328 452 - -
Chy06g00018 485 SMART serkin_6 334 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00018 485 MobiDBLite consensus disorder prediction 190 213 - -
Chy06g00018 485 MobiDBLite consensus disorder prediction 192 206 - -
Chy06g00018 485 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 44 438 - -
Chy06g00018 485 MobiDBLite consensus disorder prediction 265 311 - -
Chy06g00018 485 ProSiteProfiles Protein kinase domain profile. 334 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00018 Chy-Chr6:114943 Chy12g00620 Chy-Chr12:8912134 7.72E-88 dispersed
Chy06g00018 Chy-Chr6:114943 Chy11g00891 Chy-Chr11:12313870 6.39E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71297 PF00069 Pkinase 9.60E-15 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00018 - - csv:101217551 856.284