Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00035 ATGACGCATTTCCTTTTATTTGCTGCCCTCATCATCTCTCTTTCACTTGCCCCCCCTTCCTTTTGCTTCCATCCCAAATCCTTTAACGTCTCCAAGTATCAGTCCTATGACTCCGATTGGTCCCCCGCCGTCGCCACTTGGTACGGTCCTCCTGATGGTGCTGGGAGTGATGGAGGCTCGTGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCGTCGTTTATTGCGGCGGGAGGCCCTTCTTTGTACAAATATGGCCAAGCCTGTGGAGCTTGTTATCAGGTGAAATGCTCTGGAGAAGGCGCATGCTCAGGGAATCCAGTGACAGTTGTTATAACTGATAGTTGTCCCGGTGGATCCTGTGCTTCCGACTCCGTCCACTTTGACCTAAGTGGCACTGCTTTTGGTGCTATGGCTGCTACTGGTCTGGCAGAAGAACTACGCAGTCTCGGTGTTTTGCACATTCAACATAAAAGGGTGGAATGCAATTATCCAGGAACGTCGATCAACTTCATCGTTGACTCGGGGTCGAACTTGAACTATTTTGCAGCTCTGATCGAGTATGAGGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGGAGCCGGGGACTCAAACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCCGGCTCAGCACTTCAAGCACCCTTCTCCCTCAGGCTTACTGCCCTTGACTCCGGCAAGACTGTGGTTGCTAACAACGATTGTTTCAATACATAA 771 50.71 MTHFLLFAALIISLSLAPPSFCFHPKSFNVSKYQSYDSDWSPAVATWYGPPDGAGSDGGSCGYGKAVEQPPFSSFIAAGGPSLYKYGQACGACYQVKCSGEGACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGLAEELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNLNYFAALIEYEDGDGELGSVELKQGAGDSNSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKTVVANNDCFNT* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 263379 267019 - Chy6G105630.1 Chy06g00035 227744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00035 256 PANTHER EXPANSIN-B3 2 250 - -
Chy06g00035 256 Gene3D - 26 163 IPR036908 -
Chy06g00035 256 Pfam Expansin C-terminal domain 170 251 IPR007117 -
Chy06g00035 256 Gene3D - 164 254 IPR036749 -
Chy06g00035 256 SUPERFAMILY PHL pollen allergen 169 251 IPR036749 -
Chy06g00035 256 Pfam Lytic transglycolase 77 155 IPR009009 -
Chy06g00035 256 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Chy06g00035 256 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Chy06g00035 256 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Chy06g00035 256 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Chy06g00035 256 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Chy06g00035 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 251 IPR007117 -
Chy06g00035 256 SMART dpbb_1 76 158 IPR007112 -
Chy06g00035 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 168 IPR007112 -
Chy06g00035 256 SUPERFAMILY Barwin-like endoglucanases 33 167 IPR036908 -
Chy06g00035 256 PANTHER EXPANSIN-B2-RELATED 2 250 - -
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Chy06g00035 256 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00035 Chy-Chr6:263379 Chy11g01152 Chy-Chr11:17431592 1.34E-68 dispersed
Chy07g01553 Chy-Chr7:19772374 Chy06g00035 Chy-Chr6:263379 5.39E-08 dispersed
Chy06g00035 Chy-Chr6:263379 Chy01g00353 Chy-Chr1:2560711 6.39E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00035 - - csv:101219528 477.633