Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00045 ATGGAACCAATTTTCAATTATATTGAAGCATCTGATGCTAAAGCAAACTCCTTTTCTCACTCTCCCTCTATCACAACCCATCATGAGTACCAACAAGTTTCTCACAACACAAAACAGACCACGACTATTCAACAAAACAGACACCACCCTATGTTCCGAGGAGTTCGTAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACTAGAATTTGGCTTGGAACATACCCAACGCCCGAAATGGCAGCTCGAGCCCATGACGCCGCAGCCCTCGCCATTAAAGGTCGCTCTGCTTTTCTAAACTTCCCCGAATTGGCCCAATTCCTTCCTCGCCCGCTTTCCAGGTCCCATAAGGACATTCAGGCTGCCGCGGCACAGGCAGCGGCTGCAACATTTTCTGGCGGAATCAACGCTGAAAGTGGAGGAGAGGAAGCGGTGGAGGAGAGCAGGGAGCCTCTGTTTCTTGGAAGCGATGGGGGGGAGAGAACAGAGGATTCCACAAACTCAACGTCGACAGTGGCCGGTGATGAGACATTGTTCGATTTGCCTGATTTGGTCATGGGTAGTTCTGATTTAAAAGATGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTTTGTGCGGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCGTTCTGGGAACTCATTTAA 693 48.92 MEPIFNYIEASDAKANSFSHSPSITTHHEYQQVSHNTKQTTTIQQNRHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGRSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSGGINAESGGEEAVEESREPLFLGSDGGERTEDSTNSTSTVAGDETLFDLPDLVMGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 339738 340430 - Chy6G105730.1 Chy06g00045 227754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00045 230 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 MobiDBLite consensus disorder prediction 147 177 - -
Chy06g00045 230 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 MobiDBLite consensus disorder prediction 148 163 - -
Chy06g00045 230 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Chy06g00045 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 228 - -
Chy06g00045 230 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Chy06g00045 230 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Chy06g00045 230 PANTHER ETHYLENE RESPONSE FACTOR 31 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00045 Chy-Chr6:339738 Chy06g02066 Chy-Chr6:24840708 7.32E-40 dispersed
Chy06g00045 Chy-Chr6:339738 Chy05g01389 Chy-Chr5:17949100 9.59E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18062 PF00847 AP2 1.10E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00045 - - csv:101202887 442.965