Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00051 ATGGGCGGGAGAGATGACGACGTGGGACTCACTTTGAGTTTAGGTTTTGGTGTTACGACTCAGCCCACTCACATGCAAAGGCCGTCGTCGATGCATAATCATCACCTCCGCAAGACTCCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGAGGAATCGACGTGAATCGGTTGCCGACGGGCGTGGACGGAGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATTAGTGGAAAGAGAAGCGAGAGAGAAGCGGCTGGAGACGAGGCGGAGGCGGAGGCAGAGGCAGAGGCAGAAGCGGAAGCGGAAGCCGAAAGAGCCTCGTGCTCGCGAGGGAGTGATGATGAAGACGGCGGAGGCGGGGACGGTGACGCGTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCAATGGTTCTTGAAGAGACGTTCAAAGAGCACAATACGCTGAATCCTAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGGAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTTTATATGCACATGAATCCTCCTACCACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCATCTTCTTCGACCTCAGCTGCTACGACCACTCGCCATCAAGCAGCGGCTGGTGTGCAGCGTCCTTCCATGGCCATCAACCCGTGGGCAGTGTTGCCGGTTCAACGTTGA 879 52.45 MGGRDDDVGLTLSLGFGVTTQPTHMQRPSSMHNHHLRKTPWNELFQFSDRNADSRSFLRGIDVNRLPTGVDGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATTTRHQAAAGVQRPSMAINPWAVLPVQR* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 369239 371130 + Chy6G105790.1 Chy06g00051 227760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00051 292 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Chy06g00051 292 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Chy06g00051 292 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Chy06g00051 292 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Chy06g00051 292 MobiDBLite consensus disorder prediction 75 91 - -
Chy06g00051 292 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
Chy06g00051 292 MobiDBLite consensus disorder prediction 113 140 - -
Chy06g00051 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 288 - -
Chy06g00051 292 PANTHER - 3 288 - -
Chy06g00051 292 SUPERFAMILY Homeodomain-like 125 196 IPR009057 -
Chy06g00051 292 Gene3D - 132 200 - -
Chy06g00051 292 SMART HOX_1 137 199 IPR001356 GO:0003677
Chy06g00051 292 Coils Coil 201 231 - -
Chy06g00051 292 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355|GO:0043565
Chy06g00051 292 CDD homeodomain 139 196 IPR001356 GO:0003677
Chy06g00051 292 MobiDBLite consensus disorder prediction 65 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00808 Chy-Chr2:5048828 Chy06g00051 Chy-Chr6:369239 1.80E-58 dispersed
Chy02g02272 Chy-Chr2:26791931 Chy06g00051 Chy-Chr6:369239 1.05E-51 dispersed
Chy06g00051 Chy-Chr6:369239 Chy06g02070 Chy-Chr6:24888308 3.00E-63 dispersed
Chy06g00051 Chy-Chr6:369239 Chy01g01900 Chy-Chr1:24280237 9.39E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18063 PF04618 HD-ZIP_N 4.70E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00051 K09338 - csv:101222132 481.485