Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00062 ATGAACGTCAAATCTCCACCGACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGTGAGGGAACTTTTGCTAAGGTCAAGTTCGCAAAAAACGTCGAAAATGGTGATTATGTCGCCATTAAGATTCTCGACCGGGAAAAAGCTCTTCGCCACCGAATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTCAAAGTGATCAAGCATCCGAACGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTATGCGGATGGAGGCGAGCTTTTTGACAAGATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTCGGATTGAGTGCATTTTCGCAGCAAGTACGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACCCCAAACTACGTAGCTCCTGAGGTCCTCAATGATAAAGGTTATGACGGTTCATCTTCTGATCTTTGGTCATGCGGGGTCATTCTCTTTGTTCTTATGGCTGGTTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTATAGAAAAATTTCCAGGGCTGATTTTGAGTTCCCATCGTGGTTCTCAAGTGGTGCAAAAAAACTAGTTCGCCGCATTCTTGATCCCGACCCTACTACTCGAATATCAATAGCAGAAATTCAAGAGGATCCATGGTTCAAGAAAGACTACACACCTGCTCATTTTGAAGTGGAGGAGGACATAACTCTTGATGATGTAGATGCTGCTTTTAGCAGCTCGAAGGAACATCTAGTTACGGAACGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTTAGTCTTGAAAATCTATTCGAGAAGCAGAAGACTGTTGCAAAGAGAGAAACTCGTTTTACTTCGCAAAGCCCTGCAAATGAGATCATGTCAAAGATTGAAGAAACTGCAAAACCGATGGGTTTCAATGTACGAAAGCGGGACTACAAGATGAAGTTGCAAGGGGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTCTTTGAAGTGGCTCCTTCCCTGCATATGGTGGAGCTTCGAAAAACAGGGGGCGACACGCTCGAGTTTCACAAGGCATGTTATCAGTAA 1266 44.08 MNVKSPPTRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKALRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEYADGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVLNDKGYDGSSSDLWSCGVILFVLMAGFLPFDEPNLMCLYRKISRADFEFPSWFSSGAKKLVRRILDPDPTTRISIAEIQEDPWFKKDYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKTVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACYQ* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 425939 430512 - Chy6G105900.1 Chy06g00062 227771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00062 421 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Chy06g00062 421 PANTHER - 8 417 - -
Chy06g00062 421 Gene3D Kinase associated domain 1, KA1 306 421 - -
Chy06g00062 421 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00062 421 CDD STKc_SnRK3 14 269 - -
Chy06g00062 421 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Chy06g00062 421 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 8 417 - -
Chy06g00062 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Chy06g00062 421 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00062 421 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00062 421 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Chy06g00062 421 Pfam NAF domain 309 369 IPR004041 GO:0007165
Chy06g00062 421 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Chy06g00062 421 CDD CIPK_C 313 419 - -
Chy06g00062 421 Gene3D Transferase(Phosphotransferase) domain 1 95 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00039 Chy-Chr5:263124 Chy06g00062 Chy-Chr6:425939 0 dispersed
Chy06g00062 Chy-Chr6:425939 Chy12g00083 Chy-Chr12:837203 1.47E-167 dispersed
Chy11g01612 Chy-Chr11:22678895 Chy06g00062 Chy-Chr6:425939 8.48E-150 dispersed
Chy06g00062 Chy-Chr6:425939 Chy12g00355 Chy-Chr12:3797110 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71298 PF00069 Pkinase 1.80E-73 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00062 - - csv:101203531 832.402