Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00080 ATGGAGTCTCCTGATACTGCTGCTGAGAAAGATCCTACCGGTCGTTACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAATCAAGTTAGGATTGATGGTTTCTTGCAATCACCTGAGGATTTGGAAAAGTTGTACTCTGAAGTACATTTACTTAAATCATTAAAACATGAGAATATAATCAAGTTCTATAATTCTTGGGTGGATGATAAGAAGAAGACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATATCGTAAAAAGCATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCACGACAGATTCTCCGAGGGTTGGTTTATCTTCACAGTCATGATCCTCCCATTATTCATAGAGATTTGAAAGGCGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCAGCCTACCGCTCGTAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTGACCTTTGAGTATCCATATAGTGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAACCTGCTTCCCTTGCTAAGGTGAGTGATCCACGGACCATGGAATTCATCAATAAATGTTTGGTTCCAGTGCACGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCGTTCCTTCAAGTTGAGAACCCAAAGGAATCGGCACGCAATCCCCTACAGCTATCTAATCAGGTTTCTAAATCAATAAATTTGCCCAAGAGTGGACCTATTTCCATGGACATTGACATTGACCAAAAACTACATTCTTTAAGCACTTATGCTGAAAGCAACAGCGGGAGTCCACACTTTCCAGTCGTGGAATTCCAGACAATGAATAAGAACAATGAGTTCAGGTTACGTGGAAATAAGAATGACGATAACTCTGTGGCATTAACTCTGCGTATTGCAGACTCAAATAGTCGAGTGAGGAATATACATTTTACGTTTTATCTCGATTCTGATACTGCATTGTCAGTTGCTGCTGAAATGGCTGAACAGTTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGATGGAAGCCCTTGTCTGTTTATTCCTCAAATGGAGAATCGGGTCTTTGCAGCGCCCCCCCTATCCTTAAAAGTGCCAAATCATCTATAGGATCTGCTTGGGGTTCAATGTTAACAAGTCATGATGGGTTGGTCGCACAAGACATTTCTTCTGGGTTGGGGTGTGGTACTCAAAAGGATTGTCTGCAATCTGAACAAGATGGCTGGACTACTGATATTTCCGGTGGTCACATTTTTAATACTTGCCCTTCTTCGCCCAGTTTGGCTAATTTTGAGGACTTGAATTCACATGCTTCATTCGCGTTGGAGTTACTGGTTGACGATTGCTCTACCAAAAGTGCTAAGGTGTTTGATTGTTCCAATATCGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGCAGAACTAGAGCACCACGGTTCATCATATGTTGTTGAAGACAAATTTCAAAGAAATGTTAGTGATGTTGGAATCTTCACTCCCATGGATTATTTTGCGAAGAACTCGGTGGTGTCAATGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGCTCTTCCTTATCGTTAACAGACAAGGATCTCGATGCTGAACTGAAGATGGAAATCGATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTTTCTCGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAGGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1989 41.18 MESPDTAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQILRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIFRKVTSGIKPASLAKVSDPRTMEFINKCLVPVHERLSAKELLKDSFLQVENPKESARNPLQLSNQVSKSINLPKSGPISMDIDIDQKLHSLSTYAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDDNSVALTLRIADSNSRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVYSSNGESGLCSAPPILKSAKSSIGSAWGSMLTSHDGLVAQDISSGLGCGTQKDCLQSEQDGWTTDISGGHIFNTCPSSPSLANFEDLNSHASFALELLVDDCSTKSAKVFDCSNIDGSSKGSSWSIAELEHHGSSYVVEDKFQRNVSDVGIFTPMDYFAKNSVVSMPAPSEASNVMSLTSSCSSLSLTDKDLDAELKMEIDAIETHYRQLFDELSRMREEALEATRRRWIAKKKLIH* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 529845 533151 - Chy6G106080.1 Chy06g00080 227789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00080 662 CDD STKc_WNK 15 274 - -
Chy06g00080 662 SMART serkin_6 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00080 662 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 412 IPR024678 GO:0004674|GO:0005524
Chy06g00080 662 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
Chy06g00080 662 PANTHER KINASE DOMAIN PROTEIN 2 660 - -
Chy06g00080 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 660 - -
Chy06g00080 662 Coils Coil 625 652 - -
Chy06g00080 662 SUPERFAMILY Protein kinase-like (PK-like) 19 275 IPR011009 -
Chy06g00080 662 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Chy06g00080 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Chy06g00080 662 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00080 662 Gene3D - 355 420 - -
Chy06g00080 662 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00080 Chy-Chr6:529845 Chy09g01320 Chy-Chr9:15120045 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71299 PF00069 Pkinase 4.10E-53 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00080 K08867 - csv:101204101 1271.91