Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g00092 | ATGTCTTGCTCTGTTTCCAATGAGAATTTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAATAAGCTGTCGGATCTGGTGGAGAGACCCAACGCTTCTAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCTCATTCTAAATCCGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGATGAAACGGAAGCTACACAGATTCTTAGTCTACAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGAGCACTGCAGAAACTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTACGCTCTTGGATTGGACAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGAGGCCCTGGGAAGTGTTTGGCGTCTGGGAAACATATCTGGAATTTGGATGTGCTTAATTCGCCTTCTGAGTATTGTGTGAGATCATACCTTGCGAAATCTGCGGGAATTCAGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTGAGATCCGTGAATGAGAGCCTAGAGTTAGTGCAGTTGATCAGATCATTGTTTTCGTCCCAGCTTTCACTTGACAGAGTGAGGTCGTCAGCAGCGATGTCCATGATAGCTGAAAGAAAAGATGAAAGCACCTCATTTGCGAGTTGGGGAATTGCAGAAAGAGGAGAAGGAGGAGGAGGGATTCCCAAGGTTTTTGGGCAGACTTTGAATTCGGGGAACATGGGTCGTTCTCATTTCCGAGAGAAACTGGCGATTAGAAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTACATGGTCTCAAGCAGGGGAATCATTCCCCTGCAGAAATTTATGTCTCTCCAACTCCACCAGTAAATAATAATCATGAGCAGCTAGTCAGTGGAGTCAGAGATGAATTTGGTCTGAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCGGTAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAGGAGCTGATTCAGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGATGAAAGACGACCTCGCAAGCGAGGCAGGAAGCCTGCAAATGGCAGGGAGGAGCCACTAAATCACGTTGAGGCAGAAAGGCAACGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATTAACGAACTTCAAGAAAAAGTGAAGGTCATGGAATTTGAACGTGAGAAATCCAGCCTCACCTCAAGCGAGGCAACACCTTCGGAAGGGAACCCAGAAATTGAAACTAAAGATCAATTCCTAGATGTCGACATTGATGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCGTTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAGAGATGCTCAAATCAATGTTATTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACGTTTGTCATCAAGTCTCCTGGATCCGAGCAGTTGACAAAGGAACAGCTGATAGCTGCATTTTCCCGGGACTCAACCTCGTTACATCCTCTACCAACAGTTGGGTAG | 1764 | 45.52 | MSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGDETEATQILSLQLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHIWNLDVLNSPSEYCVRSYLAKSAGIQTVVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMIAERKDESTSFASWGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVHGLKQGNHSPAEIYVSPTPPVNNNHEQLVSGVRDEFGLNPYQSQKLAQMQIDFSVATSRPSVINRVGADSEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKVMEFEREKSSLTSSEATPSEGNPEIETKDQFLDVDIDVEAAHDEVIVKVSCPLESHPASRVIKAMRDAQINVIDSKLSEANDKVLHTFVIKSPGSEQLTKEQLIAAFSRDSTSLHPLPTVG* | 588 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 623456 | 625219 | + | Chy6G106200.1 | Chy06g00092 | 227801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g00092 | 587 | PANTHER | TRANSCRIPTION FACTOR MTB1 | 1 | 581 | - | - | |
| Chy06g00092 | 587 | PANTHER | MYC | 1 | 581 | IPR045084 | GO:0003700|GO:0006355 | |
| Chy06g00092 | 587 | CDD | bHLH_AtAIB_like | 409 | 482 | - | - | |
| Chy06g00092 | 587 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 412 | 461 | IPR011598 | GO:0046983 | |
| Chy06g00092 | 587 | SMART | finulus | 418 | 467 | IPR011598 | GO:0046983 | |
| Chy06g00092 | 587 | MobiDBLite | consensus disorder prediction | 472 | 491 | - | - | |
| Chy06g00092 | 587 | Pfam | Helix-loop-helix DNA-binding domain | 416 | 462 | IPR011598 | GO:0046983 | |
| Chy06g00092 | 587 | MobiDBLite | consensus disorder prediction | 378 | 423 | - | - | |
| Chy06g00092 | 587 | MobiDBLite | consensus disorder prediction | 375 | 423 | - | - | |
| Chy06g00092 | 587 | Gene3D | - | 405 | 477 | IPR036638 | GO:0046983 | |
| Chy06g00092 | 587 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 20 | 208 | IPR025610 | - | |
| Chy06g00092 | 587 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 415 | 475 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g01067 | Chy-Chr4:15999752 | Chy06g00092 | Chy-Chr6:623456 | 8.42E-89 | dispersed | |
| Chy06g00092 | Chy-Chr6:623456 | Chy06g02223 | Chy-Chr6:26401561 | 1.40E-14 | dispersed | |
| Chy06g00092 | Chy-Chr6:623456 | Chy06g02143 | Chy-Chr6:25749137 | 6.91E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18066 | PF14215 | bHLH-MYC_N | 6.10E-54 | CL0161 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g00092 | - | - | csv:101208845 | 1142.49 |