Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00103 ATGTCCAAGTGTATGGGTTCTCAGATGCCAAAATCTGTGAGATTTGGAGGTTACCCATACAGAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGGATAGAGACAAGATTTTCAAGTATTTCTGATTGGTTTAGAAGAATAATTACAATCTTAGGCTTCAAGCATTCAGGTGATCAGTCAGCAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCAATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGTTCGATGGAAAAGATCAATGCCTAACCGTGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATCGACTTATTTTATCTACTCCACATGATCTTTGAATTTCGAACCGGTTATCTCCCCCCATCTTTACCGGTTTTTGGAACTGGTGAATTAATCAAAGATCCAGCAAAAATAGCAAAGAAATATCTTTTCTCAAACTTCTTGATCGATTTCTTATCCATTATCCCATTACCTCAGCTTTTGGTATTAGTAATCATACCTGCAGCGGAAGGCCCTATTCCCTTGAAAACGAAGGATGCCATGAAAATGGCAGTTCTTTTGCAATATATTCCAAGACTTCTCCGAATATATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCTTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCTAGCTAGTCATGTAGTTGGTGCCGTTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGATCCAAGCATGCAAGGAAGATGACATTAACTGTACTGGAAAGTTTTTGTACTGTGGAACTCATAAAAGGAATGCGTACCCATCTATAAACAAGACTTGCTTTCCTAAAGAGTCTGACGGAAAAGACGGCTTTGAGTTTGGGATGTATGCTGAAGCCCTTAAGTTTAACTTAACCGATACTATGAGTTTTCGCCGTAAATTCTGCTATTCCTTTTGGTGGGCTCTACGAAATGTTGGCTCTAGTGGACAAAATCTTGAAGTAAGCCATTTCATGGGAGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTTCTCATTAGCAATATTCAGAAATATCTGCAGTCAGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGATGCTGAGCATTGGATGGCACACCGTATGCTCCCAGACGAGTTGAGGTATCGTATACGACGATATGATCAGTACAAATGGCAGCTAAATAGAGGAGTTAAGGAAGAGGAACTCATCAGTAACTTTCCTAAAGACCTCAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAACAACTGTTGGACGCAATGTGCGAATATCTTAGGCCAGTGTTATTCACAGAGAAGAGCTTCATTATGCAAGAGGGTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGATGGCTACCATTATTGGTTGTGATTGGAAAAACGACCTGTACTCGGACACTCTTAATGCTGGCGATTTCTGTGGTGAAGAGCTAGTTCATTGGGCAATGGATCCCACCACCAACACTTCTTCTCTTCCCATTTCAAAAAGAACAGTTGAAACTCTAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACCAGTCAGTTCCACTCCCAGCAACTCAATAGCAAGCACTTCCAATTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCCGCCTACAAAATACAAGAAGCTTGGCACGATTACCGCGAAAGAAAGCGGAGGGGGGGTGGAGAAGGTAGATTTCAAGATGCAATGGCTGAAATAGTTGGCCCCTCGACGAGCTTTAACGCCACTCTATATGCATCCATATTCATATCCCATCTACTGCAGGTCGTGCAGAGAAATCAACCCCAGCACACTCCCCAATTCACACGAGTGATGACTCTACCGCCACCCCCGAAGCCAGAAGATGAGCAAAACAACCCAAACTTCACCATCTTGGATCATTAA 2121 41.68 MSKCMGSQMPKSVRFGGYPYRSRLSPGSILERIETRFSSISDWFRRIITILGFKHSGDQSAKKPKFWKKILDPHKQFLQQWNKIFVLSSVIAVAVDPLFFYVPVFDGKDQCLTVDRQLMIIACVLRSFIDLFYLLHMIFEFRTGYLPPSLPVFGTGELIKDPAKIAKKYLFSNFLIDFLSIIPLPQLLVLVIIPAAEGPIPLKTKDAMKMAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMLASHVVGAVWYLLSIERQAKCWIQACKEDDINCTGKFLYCGTHKRNAYPSINKTCFPKESDGKDGFEFGMYAEALKFNLTDTMSFRRKFCYSFWWALRNVGSSGQNLEVSHFMGEVFFAVFIAILGLVLFAFLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHLCLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIGCDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNTSSLPISKRTVETLTEVEAFALKANELKFVTSQFHSQQLNSKHFQFSVRFYSHQWKVWAAYKIQEAWHDYRERKRRGGGEGRFQDAMAEIVGPSTSFNATLYASIFISHLLQVVQRNQPQHTPQFTRVMTLPPPPKPEDEQNNPNFTILDH* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 680407 684014 - Chy6G106310.1 Chy06g00103 227812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00103 706 ProSiteProfiles cAMP/cGMP binding motif profile. 473 556 IPR000595 -
Chy06g00103 706 SUPERFAMILY cAMP-binding domain-like 403 589 IPR018490 -
Chy06g00103 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 702 - -
Chy06g00103 706 CDD CAP_ED 473 606 IPR000595 -
Chy06g00103 706 Gene3D Helix hairpin bin 400 464 - -
Chy06g00103 706 SUPERFAMILY Voltage-gated potassium channels 73 395 - -
Chy06g00103 706 Pfam Ion transport protein 80 399 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy06g00103 706 Gene3D - 79 397 - -
Chy06g00103 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 37 702 - -
Chy06g00103 706 MobiDBLite consensus disorder prediction 680 706 - -
Chy06g00103 706 Gene3D Jelly Rolls 471 591 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00103 Chy-Chr6:680407 Chy06g01239 Chy-Chr6:11307030 1.75E-134 dispersed
Chy06g00103 Chy-Chr6:680407 Chy06g00104 Chy-Chr6:687814 0 tandem
Chy06g01131 Chy-Chr6:9811722 Chy06g00103 Chy-Chr6:680407 2.95E-16 transposed
Chy06g01730 Chy-Chr6:20155535 Chy06g00103 Chy-Chr6:680407 4.17E-97 transposed
Chy09g00212 Chy-Chr9:1790434 Chy06g00103 Chy-Chr6:680407 2.05E-106 transposed
Chy12g01580 Chy-Chr12:19306842 Chy06g00103 Chy-Chr6:680407 4.41E-124 transposed
Chy06g00103 Chy-Chr6:680407 Chy06g01237 Chy-Chr6:11278957 1.13E-12 wgd
Chy06g00103 Chy-Chr6:680407 Chy09g01430 Chy-Chr9:15884045 1.05E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00103 K05391 - csv:101206492 1398.65