Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00104 ATGTGGAGCCACGTCAGGAGTCAGGAAAGCGTGGAACATAGCGGGAATTTTGAAAGTTGTTCCGTCCCTCCATTTGACTCAGCTCCCGCCCTTCCAACGGTCCTTCTATCGCCACGGTTCCTAGTTCTCCTCTCGACACGTGTACGTTCCAAGTTGATTCCATGGGCCCCACTCCTGACACCCAAAACTTCTGCCATTTGTGTTCATCAATCCCTATCAATTCGCGTTTCAGAGCTCTGTTCTGGAGCTTACGTTACTAAATTTGTCGACACTAAGTCTTTTGAACGACTGTTGGAATCTTGTTTGCAGGTGAATAATCAAGCTTACAAGAGCTATACCTATGCATATAACCACAGAGATGTGATCATTCTGCTTTCAACTGATATGAAGACGGCACAGAGAGCTCAAGATACAAAAAAAGCTTTGGATGAAACTGAAAACAACCTACCAAACAACAAAACTGAGGCTCCTATAACAGACGCAGGTTCAGTATCTGGCTCAAACAATGATGGCAAAAAAGTTTCTCACCAAGATATTGAATTTGTTCAGAATTTAATAGAGCGGTGCCTACAATTGTATATGAATAGAGATGAAGTAGTTAAGACCCTACTGAATCGTGCAAGGATAGATCCTGGATTTACGTCATTAGTTTGGCAGAAGCTGGAAGAAGAGAATGCTGATTTTTTCAGAGCTTATTACATAAGGTTAAAATTGAAAAAGCAAATCCTCCTTTTTAATCATTTGCTTGAACATCAATACCGTCTCATGAACTATTCCATGCCTCCCAAAGTTCCTTTAGCTCCTATGCAGAATGGAATTCATCCTATGTCTGTTAACAACTTACCAATGGGATATCCAGTCCTTCAACAACCTCCTATGTCAATGCCAGGTCAACCCCATTTGGATACCATGGGCTCTGGAATGTCAAGCTGCCATGTTGTTAATGGAGTTCCTGCACCTAGTAACTTCCATCCTATTAGGATGAACTCTGGGAACGACGAGGCCGATATGGTTCCTGTTATTCCACCAAACGGTAACATGTCCTCCCTTTCAGAGATGTCTCTGAGTCCTACATCAGTGGCATCCAGTGGTCATTTCTCATTCACTGCTCCAGAAATATCTGGAATTGGAGTAGATACTTCTGCGCTCGATACTGCATTTACATCAGACATGGTAAGTTCGGTGGGTCTGCAACTTTCACAAGATGGTGGAGCTGGAAATTCTAGGGATTCTCTCAGATCATTGGATCAGATACAGTGGAATTTTAACCTGGATCTTACAACAGATTTATCAAATTTGGGAGATTTAGAACCATTAGGTAACTACCCTGGTTCTCCTTTTTTGCCCTCGGACTCAGAAATTTTACTTGATTCACCGGAGCAAGAAGATATAGCTAAGCAGTACACTGTACATATACTACCATCAGAGGCACAGTTTAGCCCACAATGCCAAATTTTGCAAGCTAAGCAGTACACTGTACATATACTACCATCAGAGGCACAGTTTAGCCCCACAATGCCAAATTCTGCAAGATATGGAGGTTACCAATACAGAAGCAGAATGTCTCCAGGGTCAATATTGGAAAGCATAGAGAGAAGATTTTCAAGTGTTTCTGATTGGTTTAGAGGAATAAGTACAATCTTTGGCTTCAAGCATTCAGGTGATCAGTCAGTAAAGAAACGAAAATTTTGGAAGAAAATTCTTGATCCAAATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTCTGTCATAGCAGTAGCCGTGGATCCTCTCTTCTTTTACGTCTCAAGGATCGATAAAGAACTTTATTGCCTAACCGTGGACCGACAACTGACCATCATTGCTTGTGTTCTTCGTACATTCTTCGACTTATTTTATATACTTCACATAATCTTTGAATTTCGAACCAGTTTTCTTCCTCCTTCTTTACCGGTTTTTGGAAGTGGTGAGTTAATCAAAGATCCAGCAAAAATAGCAATGAAGTATCTCTCCTCAAACTTCTTGATCGATGTCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGCAATCTTACCTGCAGCGAAAAGCTATACTCTCGCGAAGTCAAGGAACTTCCTGAACACTGCAAATATTTTGCAATATATTCCAAGAATTTTCCGAATCTATCCACTCTATAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCTTGGAGTGGAGCTGCTTTCAATCTCCTCATCTATATGCAAGCTGGTCATGTAGTTGGTGCCGCTTGGTATTCGTTATCAATCAAACGACAGATCAGATGTTGGTTCAACGAATGCAAGAACGATAAGATCTGTATCCACAATTTTCTGTACTGTGAAGATCCAAAAGGACAAACAAACTCAACTTTAAATGAGTATTGCTCTCCTAGAAAGTTGGAAAATGGAAAACACTTCGAGTTTGGGATGTTTGATGAATCCCTTAAGTTTCAATTAACCACGACAACGAATTTTTGCCGGAAATTATTCTATTCCTTCTGGTGGGCTTTGCAAAATGTCAGCTCTAGTGGACAAAACCTTAAAGTAAGCAAGTACATGGAGGAGGTTTTTTTTTCTGTCTTCATCGCCATCCTTGGTTTGGTTTTATTTGCGTTACTCATTAGTAACATTCAGAAATACCTGCAGTCGGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGACGACGTATTCGGCGATATGGTCAGTACAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACAACACCTTTGCTTGGCCCATCTTAAGAAAGTGCCTCTTTTTAGCAGCATGGACAAACAACTGTTAGACTCGATGTGTGAATATCTCAATCCTGTCTTATTTACAAAGAAGAGCTTCATTCTGCAAGAGGGTGACACAATTGATATGATGCTATTTATCATGAAAGGAGAGCTGGCTACCCTTACTACTTGTGGTTGGAAAGATAACCTGTACTTGGGTTCTCTTAAAGCTGGTGACTTTTGTGGTGAAGAGCTAGTCCAGTGGGCAATGGATCCCAGCTCCACTTATCTTCCCATTTCAAATAGAACAATTAAAACTCTTACTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGGAATCTGTAACTAGTCAGTTCCGCTACCAGCGTCTCAATAGCAAGCAGTTCCAACTCTCAGTGAGGTTCTATTCTCATCAATGGAGAGTTTGGGCAGCCTACAAAATACAAGAAGCTTGGGAGGATTACCGTGAAAGAAAGCGGAGGGGAGGTGGAGATGGCAGGTTTAAAGATGCATTAGCTCAAATTGTTGACGCCTCAGCGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCGTATCTACTGCAAGCTGTGCAGCGAGATCAACCCCAGCAAACTCCCCAAGTCACACGAGTGACAAATCTATCGGCGCCTCCGAAGCCAAATGATGAGCATAACAAGCCAAACTTCCCCAGCTTAGATCTTTAA 3603 41.69 MWSHVRSQESVEHSGNFESCSVPPFDSAPALPTVLLSPRFLVLLSTRVRSKLIPWAPLLTPKTSAICVHQSLSIRVSELCSGAYVTKFVDTKSFERLLESCLQVNNQAYKSYTYAYNHRDVIILLSTDMKTAQRAQDTKKALDETENNLPNNKTEAPITDAGSVSGSNNDGKKVSHQDIEFVQNLIERCLQLYMNRDEVVKTLLNRARIDPGFTSLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYRLMNYSMPPKVPLAPMQNGIHPMSVNNLPMGYPVLQQPPMSMPGQPHLDTMGSGMSSCHVVNGVPAPSNFHPIRMNSGNDEADMVPVIPPNGNMSSLSEMSLSPTSVASSGHFSFTAPEISGIGVDTSALDTAFTSDMVSSVGLQLSQDGGAGNSRDSLRSLDQIQWNFNLDLTTDLSNLGDLEPLGNYPGSPFLPSDSEILLDSPEQEDIAKQYTVHILPSEAQFSPQCQILQAKQYTVHILPSEAQFSPTMPNSARYGGYQYRSRMSPGSILESIERRFSSVSDWFRGISTIFGFKHSGDQSVKKRKFWKKILDPNKPFLQQWNKIFVLSSVIAVAVDPLFFYVSRIDKELYCLTVDRQLTIIACVLRTFFDLFYILHIIFEFRTSFLPPSLPVFGSGELIKDPAKIAMKYLSSNFLIDVLSILPLPQLLVLAILPAAKSYTLAKSRNFLNTANILQYIPRIFRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQAGHVVGAAWYSLSIKRQIRCWFNECKNDKICIHNFLYCEDPKGQTNSTLNEYCSPRKLENGKHFEFGMFDESLKFQLTTTTNFCRKLFYSFWWALQNVSSSGQNLKVSKYMEEVFFSVFIAILGLVLFALLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPEELRRRIRRYGQYKWQLNRGVKEEELISNLPKDLRRDIKQHLCLAHLKKVPLFSSMDKQLLDSMCEYLNPVLFTKKSFILQEGDTIDMMLFIMKGELATLTTCGWKDNLYLGSLKAGDFCGEELVQWAMDPSSTYLPISNRTIKTLTEVEAFALKANELESVTSQFRYQRLNSKQFQLSVRFYSHQWRVWAAYKIQEAWEDYRERKRRGGGDGRFKDALAQIVDASASFSATLYASIFISYLLQAVQRDQPQQTPQVTRVTNLSAPPKPNDEHNKPNFPSLDL* 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 687814 703364 - Chy6G106320.1 Chy06g00104 227813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00104 1200 ProSiteProfiles cAMP/cGMP binding motif profile. 969 1039 IPR000595 -
Chy06g00104 1200 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 179 235 IPR006476 -
Chy06g00104 1200 Pfam Plant protein 1589 of unknown function (A_thal_3526) 182 233 IPR006476 -
Chy06g00104 1200 Gene3D Helix hairpin bin 896 960 - -
Chy06g00104 1200 MobiDBLite consensus disorder prediction 135 171 - -
Chy06g00104 1200 MobiDBLite consensus disorder prediction 1170 1185 - -
Chy06g00104 1200 SUPERFAMILY cAMP-binding domain-like 899 1083 IPR018490 -
Chy06g00104 1200 MobiDBLite consensus disorder prediction 147 171 - -
Chy06g00104 1200 Pfam Ion transport protein 577 895 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy06g00104 1200 CDD CAP_ED 969 1100 IPR000595 -
Chy06g00104 1200 Gene3D Jelly Rolls 967 1085 IPR014710 -
Chy06g00104 1200 SUPERFAMILY Voltage-gated potassium channels 570 891 - -
Chy06g00104 1200 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 534 1187 - -
Chy06g00104 1200 SMART cnmp_10 969 1098 IPR000595 -
Chy06g00104 1200 Gene3D - 581 893 - -
Chy06g00104 1200 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 534 1187 - -
Chy06g00104 1200 MobiDBLite consensus disorder prediction 1170 1200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00104 Chy-Chr6:687814 Chy11g01786 Chy-Chr11:24214985 4.52E-169 dispersed
Chy06g01237 Chy-Chr6:11278957 Chy06g00104 Chy-Chr6:687814 1.71E-13 dispersed
Chy08g00785 Chy-Chr8:15500863 Chy06g00104 Chy-Chr6:687814 1.38E-06 dispersed
Chy09g00748 Chy-Chr9:9906314 Chy06g00104 Chy-Chr6:687814 4.15E-11 dispersed
Chy10g00582 Chy-Chr10:12455503 Chy06g00104 Chy-Chr6:687814 9.24E-14 dispersed
Chy06g00103 Chy-Chr6:680407 Chy06g00104 Chy-Chr6:687814 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00104 K05391 - csv:101206736 1313.52