Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00146 ATGGACAGAAAAGTTGAGGCAATAGTTGCACGCGAAAGAAGAAACGTGCCAGCTGGCCAAGCGGAGTCATCCCATCGTCAAATAAACGCGCTCCTCTCCACCCACACAAGGAAGAATCAGCTGAAGAAGGTTTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTATAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCGCCCACTCACCGCAACTCTCTCGCCGGCTCCACCCGTCAGAAGCCCATCACACCGTCCACCACCGCGTCCGGATCTGAAAAGCTCGACCCGAAACAACCGGTCTGCTCATCGGAAGAACAAAGTACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGAATCTCCGATTTGATCGTGAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGCCCAATAACCGACGACTGCTTTTCCGATCCATTCCCGGCCAACTTCGACCTTCCATGGTTGTTTAACGGAAATCCAGACGGCGAAATTGTAAAACTCCCTTGTTAA 696 50.14 MDRKVEAIVARERRNVPAGQAESSHRQINALLSTHTRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPSTTASGSEKLDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGISDLIVNDDFYVGFEELDSPITDDCFSDPFPANFDLPWLFNGNPDGEIVKLPC* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 929471 942597 - Chy6G106740.1 Chy06g00146 227855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00146 231 SMART WRKY_cls 53 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g00146 231 MobiDBLite consensus disorder prediction 108 162 - -
Chy06g00146 231 Gene3D WRKY domain 37 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g00146 231 PANTHER WRKY TRANSCRIPTION FACTOR 22-LIKE 33 220 - -
Chy06g00146 231 MobiDBLite consensus disorder prediction 111 140 - -
Chy06g00146 231 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 33 220 IPR044810 GO:0003700
Chy06g00146 231 SUPERFAMILY WRKY DNA-binding domain 51 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g00146 231 Pfam WRKY DNA -binding domain 55 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g00146 231 ProSiteProfiles WRKY domain profile. 48 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00146 Chy-Chr6:929471 Chy12g00064 Chy-Chr12:562489 5.93E-31 dispersed
Chy02g00062 Chy-Chr2:462320 Chy06g00146 Chy-Chr6:929471 3.08E-44 transposed
Chy12g00450 Chy-Chr12:5585747 Chy06g00146 Chy-Chr6:929471 1.45E-45 transposed
Chy06g00146 Chy-Chr6:929471 Chy07g01200 Chy-Chr7:16850218 3.05E-41 wgd
Chy06g00146 Chy-Chr6:929471 Chy09g01393 Chy-Chr9:15662956 6.60E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18073 PF03106 WRKY 2.40E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00146 K13425 - csv:101217082 372.474