Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00156 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACAAGGATTTCCGAATACTTTGACCGAGTTCTTAGACCGAATGTTGTTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTCAAAAGAGCCACTGTACGTGGTTTACATAGCCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCCGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTGTTTTGGGAACTTGTCAAATTATCGGAATTATTCATCAGCTTCTGGTAGAAAAGCTGATATAAGTGGAGATACTGGTGTGCCAGCAGCTTCTTCGGGTGTTGAACCGGATATCAGTAACTCCCCTGATGTTGGAAGGGACTTGCTTGAAAAGGTTAAGGATGTCTGGCAAAGTGCTGTTGATGCAGCATCTTTCACGGGACAGAAGGCTAAAGAAGTTTCGGATGAATTATCTCCGCATGTAGATAAACTACTCGATTCACATCCGTATCTAAAAAATGTGATTGTTCCTGTGAGTATGACCTTGGGTGCTACTCTTTTGGCTTGGCTGGTAATGCCTAGGCTTTTGAAGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATAATATCTGGATCCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTCGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCGTGATAGTTGCACCAACTGCAGTAGCACAGGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCAAGACTTTTGCAGGGCTTGATCGTGACAGGTTACTTACCCTTGACAAAGTTTCATCTGTTGCCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCCATGTTGACGGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGGAATATTTTGAGTGGCTTAACGATGCAGTTTTCACAGCCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCGAGGGCACAGTGGCGTGCAATCGTGAAGAGGGTTCCTTTGCAAGTTGATGATATTAGTACAGTTTCTCAGATAACAGATGATATTAAGAATATGCTCACGTCTCATCCTAAGGTGTTCTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTAGGTTGTAACCTTAAAAAAATGGGTAAAGATGAATCGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCAAAAGCTTGGAATATGTTCGACAGGCCAAGAATGCCAGATCGGAATGTTCGAACTTGCTGCTCGGCATGGGTTGCTGGCATTTCTGTAAAGCCTCACAAAATGGAAAATTGTTTTGATATGAAAATAGCTACAGGTTTCGCCATGGTTGGAACTAATAGAGGGGATGAGAGAGTAAAGATGCTGCTCATAACAATGGCGGAAAATAAAGGTCTTCACGTCGTTGTATTTCCATGGTCAGCCTTTGGCCATTTAATTCCCCATTTTCAACTCTCCATAGCTTTAGCCAAAGCAGGTGTCCATGTCTCCTTCATCTCCACCCCCAAAAATCTGCAAAGACTTCCCCCAATTCCTCCTTCCCTCTCCTCCTTCATAACTCTGGTCCCGATTCCACTCCCAAAACTCCCCGGCGACCCTCTGCCGGAAGGTGCAGAGGCCACCGTCGACATTCCGTTCGACAAAATCCCCTTCCTTAAAGTAGCTCTAGATCTCGCCGAGCCACCGTTTCGAAAGTTCATCGCCGATCATGTACATCCGCCGGATTGGTTCATCGTCGATTTCAACGTTAGTTGGATCGGTGACATTGCTCGAGAATTTCGAATTCCGATCGTTTTCTTTCGCGTTCTGTCCCCCGGATTTCTCGCTTTCTACGCCCATCTTCTTGGGACTAGGTTGCCTCTGACGGAGATCGGAAGCCTGATCTCGCCACCGCCGATCGAAGGCTCTACAGTGGCGTACCGGCGTCATGAAGCGGTGGGAATTCGCGCTGGTTTTTTTGAGAAGAACGATTCCGGGTTGAGTGATTACGAGAGGGTTACGAAGATTAATACCGCGTGTCGAGTAATTGCAGTTCGTAGTTGTTATGAATTTGATGTTGATTATTTGAAGTTGTACTCGAATTATTGCGGAAAGAAAGTGATTCCTCTAGGATTTCTTCCTCCAGAAAAGCCACCAAAAACAGAGTTCGAGGCCAATTCGCCATGGAAATCGACCTTCGAGTGGCTCGATCAACAAAACCCGAAATCGGTGGTGTTCGTCGGATTCGGAAGCGAATGCAAGCTCACAAAGGATCAAATTCACGAGATAGCACGTGGAGTGGAGCTCTCGGAGTTGCCATTTTTGTGGTCTCTGAGAAAGCCAGACTGGGTGGAGGATTCCGACGTGCTTCCATCGGGGTTCCGTGTTCGAACGGCGGAGAGAGGGATGGTGAGTATGGGGTGGGCGCCGCAGATGGAGATTTTGGGGCATCCGGCGATCGGAGGGAGTTTTTTTCACGGAGGATGGGGATCGGCCATTGAAGCTCTGGAATTTGGAAGTTGTCTCATTCTGTTGCCGTTCATCGTTGATCAGCCGCTGAATGCGAGGCTTTTAGTGGAGAAGGGAGTTGCAATTGAAGTTGAAAGAAACGAAGATGATGGGTGTTTCAGTGGAGAAGCCATAGCCAAAGCTTTGAGAGAAGCCATGGTTTCAGAAGAAGGGGGGAAGATTAGGAAGCGAGCGAAAGAAGTTGCCGCTATTTTTGGGGACACTAAGCTTCATCAACGATATATTGAAGAATTTGTAGAATTCCTCAAACATAGGGATCCGATTCCAAATCAGTAG 3117 45.2 MACRRFAACSFQSFKPYTRISEYFDRVLRPNVVLNKRYYKDESHSFKRATVRGLHSPSYGTHRIDTFLPASSMKYWNTIPLTCFGNLSNYRNYSSASGRKADISGDTGVPAASSGVEPDISNSPDVGRDLLEKVKDVWQSAVDAASFTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVAIISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAQEFVSQACRGAVILSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKNMLTSHPKVFLGKEAPYCFLSQIESTYAELTLGCNLKKMGKDESFSTEQDILLQSVQIIKAKAWNMFDRPRMPDRNVRTCCSAWVAGISVKPHKMENCFDMKIATGFAMVGTNRGDERVKMLLITMAENKGLHVVVFPWSAFGHLIPHFQLSIALAKAGVHVSFISTPKNLQRLPPIPPSLSSFITLVPIPLPKLPGDPLPEGAEATVDIPFDKIPFLKVALDLAEPPFRKFIADHVHPPDWFIVDFNVSWIGDIAREFRIPIVFFRVLSPGFLAFYAHLLGTRLPLTEIGSLISPPPIEGSTVAYRRHEAVGIRAGFFEKNDSGLSDYERVTKINTACRVIAVRSCYEFDVDYLKLYSNYCGKKVIPLGFLPPEKPPKTEFEANSPWKSTFEWLDQQNPKSVVFVGFGSECKLTKDQIHEIARGVELSELPFLWSLRKPDWVEDSDVLPSGFRVRTAERGMVSMGWAPQMEILGHPAIGGSFFHGGWGSAIEALEFGSCLILLPFIVDQPLNARLLVEKGVAIEVERNEDDGCFSGEAIAKALREAMVSEEGGKIRKRAKEVAAIFGDTKLHQRYIEEFVEFLKHRDPIPNQ* 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1021185 1026511 - Chy6G106840.1 Chy06g00156 227865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00156 1038 CDD GT1_Gtf-like 577 1019 IPR002213 GO:0008194
Chy06g00156 1038 Gene3D - 262 364 - -
Chy06g00156 1038 Gene3D - 366 414 IPR023408 -
Chy06g00156 1038 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
Chy06g00156 1038 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 844 990 IPR002213 GO:0008194
Chy06g00156 1038 PANTHER GLYCOSYLTRANSFERASE 575 1030 - -
Chy06g00156 1038 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 574 1015 - -
Chy06g00156 1038 Pfam Mechanosensitive ion channel 308 505 IPR006685 GO:0016020|GO:0055085
Chy06g00156 1038 Gene3D Glycogen Phosphorylase B; 836 1014 - -
Chy06g00156 1038 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
Chy06g00156 1038 MobiDBLite consensus disorder prediction 98 119 - -
Chy06g00156 1038 PANTHER UDP-GLYCOSYLTRANSFERASE 91A1-LIKE 575 1030 - -
Chy06g00156 1038 Gene3D Glycogen Phosphorylase B; 568 835 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00156 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 985.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00156 Chy-Chr6:1021185 Chy06g01167 Chy-Chr6:10359210 3.82E-54 dispersed
Chy06g01600 Chy-Chr6:18425693 Chy06g00156 Chy-Chr6:1021185 1.60E-12 dispersed
Chy06g00156 Chy-Chr6:1021185 Chy04g00199 Chy-Chr4:1765724 2.26E-95 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00156 . 129 505 Mechanosensitive Ion Channel Family AT4G00290 67.1 5.3e-149 524.6
Chy03g01308 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.6 1.1e-197 686.8
Chy06g01600 . 102 761 Mechanosensitive Ion Channel Family AT5G10490 54.4 6.4e-182 634.4
Chy03g01308 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.8 2.1e-196 682.6
Chy06g01600 . 82 544 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT1G53470 55.7 9.1e-261 896.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.9e-249 857.4
Chy11g01095 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.5 1.3e-280 962.6
Chy01g00654 . 59 954 Mechanosensitive Ion Channel Family AT1G78610 55.5 3.4e-273 937.9
Chy11g01095 . 216 921 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-239 824.3
Chy01g00654 . 268 942 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.1e-222 767.7
Chy02g01258 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.2 5.5e-195 677.9
Chy07g00275 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.0e-188 657.1
Chy07g00274 . 73 729 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.9e-175 611.7
Chy07g00276 . 55 702 Mechanosensitive Ion Channel Family AT5G12080 51.2 2.4e-166 582.8
Chy05g00620 . 1 531 Mechanosensitive Ion Channel Family AT5G12080 51.2 3.3e-139 492.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00156 Chy_Chr06 FPKM 6.03543 7.133538 11.152389 12.339501 7.608325 5.375575 7.260435 12.722995 11.775698 14.757386