Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00167 ATGGCGGTCGTGAGTGCTATGCAAGCAACTACTCCTCGAGTTGGTCCAATTAATTATGCCGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAAATTGTAGAAGAGCCTGTGGGAGCTATTAGTGAAGATATAATTTATGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAATTCCTCACGTGGGAAGAAGATTTGCCTCCTTCATGTTCATGTACCTGCACAGATGATTCCATTAATGGGAACCAAGTTTCCCGCAAATTCATTGGAGAAAGAGGAGGTGAAAGCATATCACGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAACGAGTATATTCTTTACTGTCTTCAAGAAGGGGTTCATGCTGACAAACTATGTGGTGAAGCCGAGTATATTGAAAAGGGAATAGTTGATATGATTTCCCTTCACAGGATCGATAAGCTTGTTATGGGAGCAGCTGTGGACAAGTGTTATTCAAGGAAAATGGTGGATTTGAAGTCTAAGAAAGCCATCTACGTACGTTCACAGGCACCGGCTTTCTGTCACATTGAGTTTATTTGCAAGGGTAACCGCATCTGCACCAGGGAGGGTATATCAGATGAAGCTCAAGTGGAAACCATCATCTCATCTCCACAAATAAGTCCAGACGCTGAATCCTCAGAAGTTACCCACCGGAGATCTCAGTCATTGCCACTGGGACAGGTTAATAGCAGGGAAGTGGGAAGCCCGTCTTCCAGTTTACGTCCTAAAAGGAGATCATTGCTTCTTGACCATTTTCGAGGGAACATACTCGATCCTTCTTCTCCAGATACTAGGAATGGGGTCCATGATGCAAAAAACTTGGATGTTGACGAGGCTATGGATGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGAAAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCATCCCCATTTTTTAGGGTTGAATTATGTGCAAATGGGCTGGAGGATGGGAAAACCAGTGACAACCTTTACAATCAATGTGAGCGGGTGATGATGGAAGCTGCAAATGCAAGGCGTGAAGCATTTCTAGAGGCAATTGCACGTAGGAAATCCGAGAAAGAAACTGTTAACGCTCTACACAGGGTCAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGGAAAACTTGAAAGTATAAAGACACAATTGAATGAAGAGATGGAAATGCTCCGGATAGCCCAAGATGAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCCGATCTAACCACAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAGTTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAAATTCATCGCGACAGTGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCGAGACCTTACACAGTTCTTCACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGCTAACTTGCGTCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGCGCCTGTCCGGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGCATTGCCACTGAGTTATGCTCAGCCCTTATGTTTCTTCACTCGAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATCTATTACTTGATGCAAATTTTGTATGCAAGCTTGGTGACTTTGGAATTAGTCGCTTATTGTCTCGGGATGAAATGCTAAACAGCGAAACCCTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAGTTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTTGGGATAATACTTTTGCGGTTATTGACCGGTAGGTCTGCAGTCAGGATAGCAAAGGAAGTGCAATATGCAATGGGAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTTGTGCAGGCCGAACAGCTCGCTCGATTGGCATTAAGGTGTTGTGATATGAAGCGAAAGAACCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGGGGCCGATTGTCCATCCAGCTTGGTTCTGCAGAACACTCTCAACCTCCCTCTTATTTTATCTGTCCCATCTTTCAGGAAATTATGCAAGATCCACATGTAGCTGCAGATGGTTATACATACGAAGCAGAGGCTATAAGAGGATGGCTAGACAGTGGACACGAAACTTCGCCAATGACGAATCTTAGGCTTGAGAACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCCATCCAGGAGTGGCTCCATCATAACTGA 2628 44.33 MAVVSAMQATTPRVGPINYAEASPIMISSSREIVEEPVGAISEDIIYVAVGKDVKECLSVLRYALNSSRGKKICLLHVHVPAQMIPLMGTKFPANSLEKEEVKAYHEFEKQNLPRVMNEYILYCLQEGVHADKLCGEAEYIEKGIVDMISLHRIDKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIEFICKGNRICTREGISDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQVNSREVGSPSSSLRPKRRSLLLDHFRGNILDPSSPDTRNGVHDAKNLDVDEAMDEWGLLTRRSPSERSENSIRSPRGVIDMAPSPFFRVELCANGLEDGKTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKGKLESIKTQLNEEMEMLRIAQDEKASLERDLLESDLTTKELEQKILSAVELLQSYKREREELQIHRDSALREAEELRKNQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRANLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANLLLDANFVCKLGDFGISRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAVRIAKEVQYAMGNGKLESILDPLAGDWPFVQAEQLARLALRCCDMKRKNRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEIMQDPHVAADGYTYEAEAIRGWLDSGHETSPMTNLRLENRNLVPNRALRSAIQEWLHHN* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1087735 1092668 - Chy6G106950.1 Chy06g00167 227876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00167 875 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Chy06g00167 875 SMART Ubox_2 808 871 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 ProSiteProfiles U-box domain profile. 804 875 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 CDD RING-Ubox_WDSUB1_like 809 850 - -
Chy06g00167 875 Coils Coil 345 365 - -
Chy06g00167 875 ProSiteProfiles Protein kinase domain profile. 517 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 Gene3D Phosphorylase Kinase; domain 1 496 589 - -
Chy06g00167 875 Coils Coil 387 442 - -
Chy06g00167 875 CDD STK_N 45 198 - -
Chy06g00167 875 SUPERFAMILY Protein kinase-like (PK-like) 495 774 IPR011009 -
Chy06g00167 875 Coils Coil 450 491 - -
Chy06g00167 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 875 IPR013083 -
Chy06g00167 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Chy06g00167 875 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 871 - -
Chy06g00167 875 SMART serkin_6 517 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 Pfam U-box domain 806 874 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 ProSitePatterns Protein kinases ATP-binding region signature. 523 544 IPR017441 GO:0005524
Chy06g00167 875 Pfam Protein kinase domain 522 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 MobiDBLite consensus disorder prediction 217 258 - -
Chy06g00167 875 SUPERFAMILY RING/U-box 800 873 - -
Chy06g00167 875 PANTHER OS02G0152300 PROTEIN 41 871 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00167 Chy11g01644 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00167 Chy-Chr6:1087735 Chy11g01234 Chy-Chr11:18463723 3.18E-28 dispersed
Chy02g00474 Chy-Chr2:2922348 Chy06g00167 Chy-Chr6:1087735 8.78E-13 transposed
Chy02g00762 Chy-Chr2:4717292 Chy06g00167 Chy-Chr6:1087735 3.38E-84 transposed
Chy09g01031 Chy-Chr9:12833155 Chy06g00167 Chy-Chr6:1087735 5.57E-120 transposed
Chy11g01809 Chy-Chr11:24432506 Chy06g00167 Chy-Chr6:1087735 4.50E-13 transposed
Chy11g01644 Chy-Chr11:22933805 Chy06g00167 Chy-Chr6:1087735 0 wgd
Chy06g00167 Chy-Chr6:1087735 Chy06g00955 Chy-Chr6:7021445 1.18E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71303 PF00069 Pkinase 9.40E-42 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00167 - - csv:101211387 1697.18