Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00167 ATGGCGGTCGTGAGTGCTATGCAAGCAACTACTCCTCGAGTTGGTCCAATTAATTATGCCGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAAATTGTAGAAGAGCCTGTGGGAGCTATTAGTGAAGATATAATTTATGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAATTCCTCACGTGGGAAGAAGATTTGCCTCCTTCATGTTCATGTACCTGCACAGATGATTCCATTAATGGGAACCAAGTTTCCCGCAAATTCATTGGAGAAAGAGGAGGTGAAAGCATATCACGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAACGAGTATATTCTTTACTGTCTTCAAGAAGGGGTTCATGCTGACAAACTATGTGGTGAAGCCGAGTATATTGAAAAGGGAATAGTTGATATGATTTCCCTTCACAGGATCGATAAGCTTGTTATGGGAGCAGCTGTGGACAAGTGTTATTCAAGGAAAATGGTGGATTTGAAGTCTAAGAAAGCCATCTACGTACGTTCACAGGCACCGGCTTTCTGTCACATTGAGTTTATTTGCAAGGGTAACCGCATCTGCACCAGGGAGGGTATATCAGATGAAGCTCAAGTGGAAACCATCATCTCATCTCCACAAATAAGTCCAGACGCTGAATCCTCAGAAGTTACCCACCGGAGATCTCAGTCATTGCCACTGGGACAGGTTAATAGCAGGGAAGTGGGAAGCCCGTCTTCCAGTTTACGTCCTAAAAGGAGATCATTGCTTCTTGACCATTTTCGAGGGAACATACTCGATCCTTCTTCTCCAGATACTAGGAATGGGGTCCATGATGCAAAAAACTTGGATGTTGACGAGGCTATGGATGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGAAAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCATCCCCATTTTTTAGGGTTGAATTATGTGCAAATGGGCTGGAGGATGGGAAAACCAGTGACAACCTTTACAATCAATGTGAGCGGGTGATGATGGAAGCTGCAAATGCAAGGCGTGAAGCATTTCTAGAGGCAATTGCACGTAGGAAATCCGAGAAAGAAACTGTTAACGCTCTACACAGGGTCAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGGAAAACTTGAAAGTATAAAGACACAATTGAATGAAGAGATGGAAATGCTCCGGATAGCCCAAGATGAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCCGATCTAACCACAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAGTTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAAATTCATCGCGACAGTGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCGAGACCTTACACAGTTCTTCACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGCTAACTTGCGTCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGCGCCTGTCCGGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGCATTGCCACTGAGTTATGCTCAGCCCTTATGTTTCTTCACTCGAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATCTATTACTTGATGCAAATTTTGTATGCAAGCTTGGTGACTTTGGAATTAGTCGCTTATTGTCTCGGGATGAAATGCTAAACAGCGAAACCCTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAGTTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTTGGGATAATACTTTTGCGGTTATTGACCGGTAGGTCTGCAGTCAGGATAGCAAAGGAAGTGCAATATGCAATGGGAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTTGTGCAGGCCGAACAGCTCGCTCGATTGGCATTAAGGTGTTGTGATATGAAGCGAAAGAACCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGGGGCCGATTGTCCATCCAGCTTGGTTCTGCAGAACACTCTCAACCTCCCTCTTATTTTATCTGTCCCATCTTTCAGGAAATTATGCAAGATCCACATGTAGCTGCAGATGGTTATACATACGAAGCAGAGGCTATAAGAGGATGGCTAGACAGTGGACACGAAACTTCGCCAATGACGAATCTTAGGCTTGAGAACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCCATCCAGGAGTGGCTCCATCATAACTGA 2628 44.33 MAVVSAMQATTPRVGPINYAEASPIMISSSREIVEEPVGAISEDIIYVAVGKDVKECLSVLRYALNSSRGKKICLLHVHVPAQMIPLMGTKFPANSLEKEEVKAYHEFEKQNLPRVMNEYILYCLQEGVHADKLCGEAEYIEKGIVDMISLHRIDKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIEFICKGNRICTREGISDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQVNSREVGSPSSSLRPKRRSLLLDHFRGNILDPSSPDTRNGVHDAKNLDVDEAMDEWGLLTRRSPSERSENSIRSPRGVIDMAPSPFFRVELCANGLEDGKTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKGKLESIKTQLNEEMEMLRIAQDEKASLERDLLESDLTTKELEQKILSAVELLQSYKREREELQIHRDSALREAEELRKNQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRANLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANLLLDANFVCKLGDFGISRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAVRIAKEVQYAMGNGKLESILDPLAGDWPFVQAEQLARLALRCCDMKRKNRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEIMQDPHVAADGYTYEAEAIRGWLDSGHETSPMTNLRLENRNLVPNRALRSAIQEWLHHN* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1087735 1092668 - Chy6G106950.1 Chy06g00167 227876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00167 875 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Chy06g00167 875 SMART Ubox_2 808 871 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 ProSiteProfiles U-box domain profile. 804 875 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 CDD RING-Ubox_WDSUB1_like 809 850 - -
Chy06g00167 875 Coils Coil 345 365 - -
Chy06g00167 875 ProSiteProfiles Protein kinase domain profile. 517 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 Gene3D Phosphorylase Kinase; domain 1 496 589 - -
Chy06g00167 875 Coils Coil 387 442 - -
Chy06g00167 875 CDD STK_N 45 198 - -
Chy06g00167 875 SUPERFAMILY Protein kinase-like (PK-like) 495 774 IPR011009 -
Chy06g00167 875 Coils Coil 450 491 - -
Chy06g00167 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 875 IPR013083 -
Chy06g00167 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Chy06g00167 875 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 871 - -
Chy06g00167 875 SMART serkin_6 517 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 Pfam U-box domain 806 874 IPR003613 GO:0004842|GO:0016567
Chy06g00167 875 ProSitePatterns Protein kinases ATP-binding region signature. 523 544 IPR017441 GO:0005524
Chy06g00167 875 Pfam Protein kinase domain 522 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00167 875 MobiDBLite consensus disorder prediction 217 258 - -
Chy06g00167 875 SUPERFAMILY RING/U-box 800 873 - -
Chy06g00167 875 PANTHER OS02G0152300 PROTEIN 41 871 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00167 - - - csv:101211387 1697.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00167 Chy11g01644 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00167 Chy-Chr6:1087735 Chy11g01234 Chy-Chr11:18463723 3.18E-28 dispersed
Chy02g00474 Chy-Chr2:2922348 Chy06g00167 Chy-Chr6:1087735 8.78E-13 transposed
Chy02g00762 Chy-Chr2:4717292 Chy06g00167 Chy-Chr6:1087735 3.38E-84 transposed
Chy09g01031 Chy-Chr9:12833155 Chy06g00167 Chy-Chr6:1087735 5.57E-120 transposed
Chy11g01809 Chy-Chr11:24432506 Chy06g00167 Chy-Chr6:1087735 4.50E-13 transposed
Chy11g01644 Chy-Chr11:22933805 Chy06g00167 Chy-Chr6:1087735 0 wgd
Chy06g00167 Chy-Chr6:1087735 Chy06g00955 Chy-Chr6:7021445 1.18E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g857 . . . . . . . . . . Cma06g01069 Cma14g02042 . Car14g01849 . . Cpe03g01733 Bhi01g00350 . . . . . . Cla05g00164 . . . . . . . Cone15ag0398 Cone11ag0428 Cone18ag1077 Lsi05g02044 Csa06g00058 Chy11g01644 Cme06g00175 . Blo16g00581 . . . . . . . . Cmo14g02105 . . . Car17g00399 . Cpe12g00371 Bhi12g01859 . . . . . Lcy13g0695 Cla06g00344 . . . . . . Lsi09g01569 Csa03g00887 Chy06g00167 Cme11g02163
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001926 1 4 1 0 1 0 3 1 1 2 2 1 3 2 1 3 1 0 3 1 2 3 3 1 2 2 3 4 2 1 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71303 PF00069 Pkinase 9.40E-42 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00167 Chy_Chr06 FPKM 1.064079 1.101127 76.567131 76.711342 29.161455 24.130033 27.151554 57.992256 56.012814 62.607338