Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00234 ATGGATCGAGCCACCGCCGCGCATGGCCGTCCACTTCCGCCGCCGTTTATTTCAAGAGATTTCCATCTCAATCCTCACCATCATTTCCTCCACCAAAATCCCGACCAACATTACAACGAAAACGGTAGCTCCGGCAGCGGCGGAGGAGACGGCGAGGTTTTGAGAAGGCCACGCGGCCGACCCGCTGGATCGAAGAACAAGCCGAAGCCGCCGACGATAATCACACGGGATAGTGCCAACGCACTCCGTTGCCACGTCATCGAAATCGCCAACGCTAACGACGTGATTGAAACCCTCACCATTTTCGCACGTCAACGCCAGCGTGGCATTTGTGTCCTGACCGGCGCCGGAGCGGTCACCAACGTCACACTCAAGCAGCCGGTCTCCACCGCTGGAGCGGTGATATCTCTGCCGGGGAGATTCGAGATTCTTTCGTTGTCGGGATCGTTTCTGCCGCCGCCAGCGCCAGCGGCGGCATCTGGGCTGACCGTGTATTTGTCCGGCGGGCAGGGGCAGGTTGTAGGAGGAAGCGTGGTGGGCCCACTTATGAGTTCGGGGCCGGTGGTGATTACGGCTGCATCATTCGGAAACGCAGCCTACGAGAGATTGCCGGTGGAGGATGATGACGTGGAAGCGGTGGATGCAGGAAGTAGTCCGATTAGGTCGCCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAATTTCATGGATTGGCGCCGAATCTAATGAACACGTGTCAAATGCCGACGGAACCCTACTGGGGCACAGGTCGTACTCCACCATTTTAG 792 57.83 MDRATAAHGRPLPPPFISRDFHLNPHHHFLHQNPDQHYNENGSSGSGGGDGEVLRRPRGRPAGSKNKPKPPTIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICVLTGAGAVTNVTLKQPVSTAGAVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLMSSGPVVITAASFGNAAYERLPVEDDDVEAVDAGSSPIRSPENAVQQQQFLPEFHGLAPNLMNTCQMPTEPYWGTGRTPPF* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1550149 1550940 - Chy6G107620.1 Chy06g00234 227943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00234 263 MobiDBLite consensus disorder prediction 26 74 - -
Chy06g00234 263 MobiDBLite consensus disorder prediction 1 20 - -
Chy06g00234 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Chy06g00234 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 263 IPR014476 GO:0003680
Chy06g00234 263 Gene3D - 82 215 - -
Chy06g00234 263 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Chy06g00234 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 209 - -
Chy06g00234 263 CDD DUF296 83 151 IPR005175 -
Chy06g00234 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 35 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00234 Chy-Chr6:1550149 Chy06g00280 Chy-Chr6:1884621 8.20E-73 dispersed
Chy11g01989 Chy-Chr11:25805445 Chy06g00234 Chy-Chr6:1550149 4.87E-81 wgd
Chy06g00234 Chy-Chr6:1550149 Chy09g01146 Chy-Chr9:13721525 7.19E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00234 - - csv:101212439 489.189