Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00240 ATGGAAGAGAGAGAAGCTATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGAGAACCCGCCGCCGCCGGCCGGCGGTGGCGGTTCACCAACAGTTGCCGCCTCGCCAGTAAGTGTGGGGCTACCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAATACGGCCCAGATGGAACGGTAACGATGGCATTGTCACCATTGCCGCTTTCTTCCTCGGCTCCGGCAGCCGGTGGCTTCTCCATTACTAAGCGGGGGAAGGGCCGGCTCGGTGGCTCGGAATTCAAGCATCACAAGAAAATGGGAATGGAATATATAGGAGAATGGAATGCGTGTGCAGTTGGGACAAATTTCATGCCTCATATCATCACAGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTCTCCCAACAAGGTCCTCGAGCAATCTGTATTCTTTCTGCCAACGGAGTAATTTCTAATGTTACTCTTCGGCAGCCCGATTCTTCGGGTGGTACCTTAACATATGAGGGTCGATTTGAGATACTTTCTTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCAAGCCCCGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAGGCCCAGTTCAGGTTGTAGTGGGGAGTTTCCTACCAACTAGCCAACAGGAGCAGCAGAAGGTAAAAAAGCAGAAGCCCGAGTCGATACCAACTGCAGCCCCTGGTTCAGTCCCGAGCATGGCACCACCCACCACTATGCCGACTTCCAATGCCGACACAGAAGACAATTTAAATGGGAACGGTGTGCAAAATCCCGGGTCATTAAAACCAACTGGTTTTGCTCCTTCGCCTTTCCAAAGAGATAATTGGGGTACCAACGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCCCTACCGACATCAATATATCGCTGCCAGGCTAA 1038 51.93 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPPPAGGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSQQEQQKVKKQKPESIPTAAPGSVPSMAPPTTMPTSNADTEDNLNGNGVQNPGSLKPTGFAPSPFQRDNWGTNAAVHSLQEPRNSPTDINISLPG* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1603331 1607356 + Chy6G107680.1 Chy06g00240 227949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00240 345 ProSiteProfiles PPC domain profile profile. 129 268 IPR005175 -
Chy06g00240 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Chy06g00240 345 MobiDBLite consensus disorder prediction 279 307 - -
Chy06g00240 345 MobiDBLite consensus disorder prediction 20 73 - -
Chy06g00240 345 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 344 - -
Chy06g00240 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Chy06g00240 345 MobiDBLite consensus disorder prediction 315 345 - -
Chy06g00240 345 Gene3D - 134 263 - -
Chy06g00240 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 253 - -
Chy06g00240 345 CDD DUF296 134 247 IPR005175 -
Chy06g00240 345 MobiDBLite consensus disorder prediction 254 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00240 Chy-Chr6:1603331 Chy06g00871 Chy-Chr6:6294210 4.26E-93 dispersed
Chy06g00240 Chy-Chr6:1603331 Chy09g01143 Chy-Chr9:13662780 5.06E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00240 - - csv:101212918 608.216