Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00242 ATGGCGCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCCGAGGTCGAAAAAGTTTGTTCAATGCTAGTAGAGAAGAAGCTACTCTACAACAAGTACGATGAAGTAGGGATTGTTCTATTTGGAACCGAAGACACTAAAAATGAGCTGACAGAGGAAGTTGGAGGATATCAGCATGTGGTGGTTTTACAGAAAATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAACATATCCCTCGAGGGACTGTTTCTGGTGATTTTCTTGACGCCATAATTGTAGGAATGGACATGCTGATAAAGAAATTTGGAGAGACAGAAAGGGGGAAGAAACGCCTATGTCTCGTGACAGATGCTCTATTCCCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATAAGAATGGATAGTGTTATTGTGAGAGGGAGCTTTGGTCAGGATGCAATTGAGAAAACGATGAATGAAAATGATCTTCTTTTAAACATATTTTCACGGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGCAGTATAGCGCCTGTGACAATTTTCAGAGGCAATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTATAAGAAAACATCAGAAGAGAAGTTTCCTACTCTGAAAAGATATTCTGATAAAGCACCTCTAACTGATAAATTTGCCACGCATGAAGTCAAGGTAGATTATGAGTACAAAAGTGCCGAAGAACCAAGTAAGGTAGTGCCTCCAGAACTTAGGATCAAAGGTTATAGGTATGGACCTCAAGTGGTTCCGATATCGACTGCTGAATGGGATGCAGTGAAGTACAAAACAGAAAAGAGCGTGAAGCTGCTCGGATTTACAAATGCCTTAAATATAATGAGGCATTACTACATGAAAGATGTGAACGTCTTCATTGCCGAACCAGGCAATACAAGATCCATTATTGCAGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCGATAGTGCGATGCGTTTGGAGACAAGGACAGGGGAGTGTTGTTGTGGGTGTCTTGACACCCAATATATCCGAGAAGGACGGTATTGCCGATTCGTTATTCTTCAATGTACTTCCGTTTGCGGAGGATGTTCGGGAATTCCAGTTTCCATCCTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAACAAGAGGCAGCAGATGACTTTGTTAAGATGCTTGATCTTGCACCAGATGGGCGAGAGGAAATTCTACAGCCGGATTTCACCCCAAATCCTGTTCTGGAGCGTTTCTACCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAGAAAATTACCGAGCCAGATCCGGACTTGTTTTCTGAAAACAAATCTGTTATCAACACCTTCCACAGAAGATTTGAACTCAAGGAGAACCCAAAGCTTAAGAAATCGAGAAGGCATTATTTACGTGAAAAAGCATCAGGTTCAAGCGATAAAGAGGACAATGAAGAGATTTCTGCTCAAATCGTCGAGTCTGTTGCCAATATGCCTACAGTTAAAGTCGAAAAGATTGGAGATTCAACTCCTCTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAATGGATCAGTAAAGCAATCAGTGGCATGACAACCAAAATATTCGATCTTATCGAGAACTCCTCCGATCGGGATAGCTACACAAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTTCTCCGCCATCTCCGTAACTTTTGCCCCCAAAAAAACCTCAATACGTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCTGCTGACAGCGAAGTAGGTGATGATGAAGCTAGAAGATTTTGGGTTAAAATGGAGCCTAAATCAGAGCAAAAATGCTCCAACGATTCGTCAACGTCTTCGAACCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATCAAGTCCAGATTTTGAGAGCCTAAATCCTCTTAAGTATGTTCCTATATTAGTAGATGGTCCTGTGGTAGTTTCAGATTCGTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCGCCTGATCTTCGGTTAAAATCTCTTCATTTTCAAGTGGCAAGTATAGTCAGCTCAAGCATACAACCTCTTATTATGTTGGAATTGCTGAAAACCATCGGGGAAAAATTTGGACCAGAAGAGCCGCTGCCATGGGCACAATCCAATTTAGTAAAAGGCTTCAATGCTGTTGAGAAACTGCTGAAGGATTTTTCTGGCCAATATGCCTTGGGAGATGAAGTACATATGGCTGATGTATTTTTGGCTCCCCAAATTTCAAGTGCTATTGAGAACTTCGGTATTGACATGTCAGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAACCCCACGGTGGGCGGAGGTGGTATTCCAGACATTTTTTAA 2721 42.48 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLLYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQKMKVVDGDLVDVLKHIPRGTVSGDFLDAIIVGMDMLIKKFGETERGKKRLCLVTDALFPIKEPYEGTKEDQVTTIAQQMTKHGIRMDSVIVRGSFGQDAIEKTMNENDLLLNIFSRKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGNLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPLTDKFATHEVKVDYEYKSAEEPSKVVPPELRIKGYRYGPQVVPISTAEWDAVKYKTEKSVKLLGFTNALNIMRHYYMKDVNVFIAEPGNTRSIIAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEKDGIADSLFFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQEAADDFVKMLDLAPDGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSENKSVINTFHRRFELKENPKLKKSRRHYLREKASGSSDKEDNEEISAQIVESVANMPTVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAISGMTTKIFDLIENSSDRDSYTKAIEYLRALRKGCIIEQEPKQFNDFLRHLRNFCPQKNLNTFCEFLASQQISLISKEEAADSEVGDDEARRFWVKMEPKSEQKCSNDSSTSSNLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQSSPDFESLNPLKYVPILVDGPVVVSDSYAILLYLEEKYPQKALLPPDLRLKSLHFQVASIVSSSIQPLIMLELLKTIGEKFGPEEPLPWAQSNLVKGFNAVEKLLKDFSGQYALGDEVHMADVFLAPQISSAIENFGIDMSVERKALNLVVVGSNPTVGGGGIPDIF* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1613829 1623700 + Chy6G107700.1 Chy06g00242 227951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00242 906 Pfam Ku C terminal domain like 566 681 IPR014893 -
Chy06g00242 906 Gene3D - 216 419 IPR016194 -
Chy06g00242 906 CDD GST_N_Zeta 702 774 IPR034333 -
Chy06g00242 906 SUPERFAMILY SPOC domain-like 215 518 IPR016194 -
Chy06g00242 906 Gene3D - 783 889 - -
Chy06g00242 906 MobiDBLite consensus disorder prediction 522 541 - -
Chy06g00242 906 Pfam Ku70/Ku80 C-terminal arm 452 534 IPR005160 GO:0003677|GO:0003678|GO:0006303
Chy06g00242 906 Pfam Ku70/Ku80 beta-barrel domain 226 431 IPR006164 GO:0003677|GO:0006303
Chy06g00242 906 SUPERFAMILY Thioredoxin-like 700 784 IPR036249 -
Chy06g00242 906 SUPERFAMILY C-terminal domain of Ku80 545 685 IPR036494 -
Chy06g00242 906 SFLD Main (cytGST) 702 879 - -
Chy06g00242 906 SUPERFAMILY vWA-like 4 232 IPR036465 -
Chy06g00242 906 Gene3D - 423 519 - -
Chy06g00242 906 Pfam Glutathione S-transferase, N-terminal domain 704 780 IPR004045 -
Chy06g00242 906 PANTHER KU AUTOANTIGEN DNA HELICASE 4 670 - -
Chy06g00242 906 Gene3D von Willebrand factor, type A domain 1 200 IPR036465 -
Chy06g00242 906 SUPERFAMILY GST C-terminal domain-like 782 880 IPR036282 -
Chy06g00242 906 TIGRFAM maiA: maleylacetoacetate isomerase 704 880 IPR005955 GO:0003824|GO:0005737|GO:0009072
Chy06g00242 906 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 786 906 IPR010987 -
Chy06g00242 906 SMART ku_4 278 419 IPR006164 GO:0003677|GO:0006303
Chy06g00242 906 Gene3D Glutaredoxin 704 780 - -
Chy06g00242 906 Gene3D - 534 685 IPR036494 -
Chy06g00242 906 CDD KU80 216 517 IPR024193 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0006310|GO:0042162|GO:0043564
Chy06g00242 906 SFLD Glutathione Transferase (cytosolic) 702 879 IPR040079 -
Chy06g00242 906 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 4 670 - -
Chy06g00242 906 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 159 IPR005161 -
Chy06g00242 906 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 700 781 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00242 K10885 XRCC5, KU80, G22P2; ATP-dependent DNA helicase 2 subunit 2 - csv:101217407 1321.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00242 Chy-Chr6:1613829 Chy11g00028 Chy-Chr11:374576 8.22E-60 dispersed
Chy06g00242 Chy-Chr6:1613829 Chy10g00997 Chy-Chr10:15434043 8.80E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01668 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 1.9e-63 239.2
Chy01g01670 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.2 2.5e-63 238.8
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.1 1.7e-64 242.7
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 5.0e-64 241.1
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT2G02930 56.5 2.3e-37 152.5
Chy01g01668 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 4.5e-59 224.9
Chy01g01670 . 6 215 Glutathione S-transferase Gene Family AT1G02950 52.6 1.1e-57 220.3
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02930 57.8 9.2e-63 236.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.7e-62 235.3
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02930 56.3 8.7e-37 150.6
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.2 2.9e-64 241.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 2.4e-63 238.8
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02920 57.6 5.5e-39 157.9
Chy01g01668 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 5.4e-68 254.6
Chy01g01670 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.3 9.5e-65 243.8
Chy01g01669 . 3 150 Glutathione S-transferase Gene Family AT2G47730 51.0 8.4e-37 151.0
Chy01g01670 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.0 4.6e-48 188.3
Chy08g00693 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 7.4e-50 194.1
Chy08g00693 . 5 221 Glutathione S-transferase Gene Family AT3G09270 54.8 9.0e-64 240.4
Chy08g00692 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Chy08g00690 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.6 1.3e-62 236.5
Chy08g00694 . 4 216 Glutathione S-transferase Gene Family AT3G09270 51.2 4.2e-61 231.5
Chy08g00695 . 2 216 Glutathione S-transferase Gene Family AT3G09270 52.3 5.5e-61 231.1
Chy08g00682 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 7.9e-60 227.3
Chy08g00685 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.2 2.5e-58 222.2
Chy06g00270 . 2 214 Glutathione S-transferase Gene Family AT3G09270 50.2 1.6e-57 219.5
Chy07g01035 . 4 214 Glutathione S-transferase Gene Family AT1G78380 69.8 2.6e-84 308.5
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78380 66.2 2.6e-84 308.5
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.7 7.7e-84 307.0
Chy07g01039 . 1 216 Glutathione S-transferase Gene Family AT1G78380 64.5 6.7e-80 293.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78380 53.3 4.4e-47 184.9
Chy07g01042 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 5.8e-76 280.8
Chy07g01035 . 8 214 Glutathione S-transferase Gene Family AT1G78370 62.5 7.6e-76 280.4
Chy07g01039 . 7 213 Glutathione S-transferase Gene Family AT1G78370 63.9 2.2e-75 278.9
Chy07g01038 . 7 216 Glutathione S-transferase Gene Family AT1G78370 58.6 3.5e-73 271.6
Chy07g01043 . 170 333 Glutathione S-transferase Gene Family AT1G78370 51.8 5.0e-43 171.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT1G78340 65.1 7.4e-79 290.4
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.6 1.8e-77 285.8
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 8.4e-75 276.9
Chy07g01039 . 1 213 Glutathione S-transferase Gene Family AT1G78340 59.8 1.2e-73 273.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78340 53.3 6.1e-49 191.0
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G78320 53.7 2.0e-59 225.7
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G78320 50.5 3.2e-57 218.4
Chy07g01035 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.8 1.4e-88 322.8
Chy07g01038 . 1 220 Glutathione S-transferase Gene Family AT1G17180 63.6 1.9e-82 302.4
Chy07g01042 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.0 7.2e-82 300.4
Chy07g01039 . 1 215 Glutathione S-transferase Gene Family AT1G17180 64.4 2.1e-81 298.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17180 53.3 1.8e-48 189.5
Chy07g01035 . 1 217 Glutathione S-transferase Gene Family AT1G17190 60.6 2.0e-76 282.3
Chy07g01042 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.4 6.3e-70 260.8
Chy07g01038 . 2 218 Glutathione S-transferase Gene Family AT1G17190 55.3 1.1e-69 260.0
Chy07g01039 . 2 214 Glutathione S-transferase Gene Family AT1G17190 57.0 4.1e-69 258.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17190 52.1 7.0e-45 177.6
Chy07g01042 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 1.2e-68 256.5
Chy07g01038 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.5 2.7e-68 255.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT3G43800 53.4 2.0e-66 249.2
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G53680 55.7 3.0e-67 251.9
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G53680 54.4 1.5e-66 249.6
Chy07g01042 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 4.8e-65 244.6
Chy07g01039 . 2 213 Glutathione S-transferase Gene Family AT1G53680 55.3 1.5e-63 239.6
Chy07g01043 . 168 333 Glutathione S-transferase Gene Family AT1G53680 52.1 3.0e-43 172.2
Chy11g00032 . 36 207 Glutathione S-transferase Gene Family AT2G02390 67.4 6.8e-60 227.3
Chy11g00028 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.9 3.1e-57 218.4
Chy11g00028 . 6 218 Glutathione S-transferase Gene Family AT2G02380 58.2 1.9e-69 259.2
Chy11g00032 . 14 205 Glutathione S-transferase Gene Family AT2G02380 61.7 8.4e-62 233.8
Chy06g00242 . 700 879 Glutathione S-transferase Gene Family AT2G02380 50.6 2.0e-47 186.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.4e-94 342.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.1 7.8e-91 331.6
Chy04g02105 . 9 235 Glutathione S-transferase Gene Family AT5G02780 67.5 4.0e-86 314.7
Chy10g00609 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 7.3e-80 293.9
Chy04g02103 . 13 143 Glutathione S-transferase Gene Family AT5G02780 69.7 5.1e-49 191.4
Chy10g00609 . 17 292 Glutathione S-transferase Gene Family AT3G55040 60.3 5.8e-87 317.8
Chy04g02105 . 6 236 Glutathione S-transferase Gene Family AT3G55040 59.3 2.4e-77 285.8
Chy04g02103 . 3 144 Glutathione S-transferase Gene Family AT3G55040 59.9 2.9e-46 182.6
Chy04g02105 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.1 1.7e-92 335.9
Chy10g00609 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 7.7e-82 300.4
Chy04g02103 . 7 148 Glutathione S-transferase Gene Family AT5G02790 69.0 1.4e-54 209.9
Chy10g00583 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 3.5e-81 298.1
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G19570 60.8 5.9e-73 270.8
Chy10g00583 . 1 211 Glutathione S-transferase Gene Family AT1G75270 71.7 6.1e-86 313.9
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G75270 62.7 1.4e-74 276.2
Chy06g01363 . 2 216 Glutathione S-transferase Gene Family AT5G16710 78.1 1.2e-99 359.8
Chy10g00583 . 3 210 Glutathione S-transferase Gene Family AT5G16710 61.1 5.9e-75 277.7
Chy07g00602 . 1 268 Glutathione S-transferase Gene Family AT1G77290 69.4 5.4e-108 387.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010606 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00242 Chy_Chr06 FPKM 0.282258 0.0 1.469761 1.101684 5.309574 2.344433 3.987589 0.0 0.0 0.350762