Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00242 ATGGCGCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCCGAGGTCGAAAAAGTTTGTTCAATGCTAGTAGAGAAGAAGCTACTCTACAACAAGTACGATGAAGTAGGGATTGTTCTATTTGGAACCGAAGACACTAAAAATGAGCTGACAGAGGAAGTTGGAGGATATCAGCATGTGGTGGTTTTACAGAAAATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAACATATCCCTCGAGGGACTGTTTCTGGTGATTTTCTTGACGCCATAATTGTAGGAATGGACATGCTGATAAAGAAATTTGGAGAGACAGAAAGGGGGAAGAAACGCCTATGTCTCGTGACAGATGCTCTATTCCCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATAAGAATGGATAGTGTTATTGTGAGAGGGAGCTTTGGTCAGGATGCAATTGAGAAAACGATGAATGAAAATGATCTTCTTTTAAACATATTTTCACGGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGCAGTATAGCGCCTGTGACAATTTTCAGAGGCAATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTATAAGAAAACATCAGAAGAGAAGTTTCCTACTCTGAAAAGATATTCTGATAAAGCACCTCTAACTGATAAATTTGCCACGCATGAAGTCAAGGTAGATTATGAGTACAAAAGTGCCGAAGAACCAAGTAAGGTAGTGCCTCCAGAACTTAGGATCAAAGGTTATAGGTATGGACCTCAAGTGGTTCCGATATCGACTGCTGAATGGGATGCAGTGAAGTACAAAACAGAAAAGAGCGTGAAGCTGCTCGGATTTACAAATGCCTTAAATATAATGAGGCATTACTACATGAAAGATGTGAACGTCTTCATTGCCGAACCAGGCAATACAAGATCCATTATTGCAGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCGATAGTGCGATGCGTTTGGAGACAAGGACAGGGGAGTGTTGTTGTGGGTGTCTTGACACCCAATATATCCGAGAAGGACGGTATTGCCGATTCGTTATTCTTCAATGTACTTCCGTTTGCGGAGGATGTTCGGGAATTCCAGTTTCCATCCTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAACAAGAGGCAGCAGATGACTTTGTTAAGATGCTTGATCTTGCACCAGATGGGCGAGAGGAAATTCTACAGCCGGATTTCACCCCAAATCCTGTTCTGGAGCGTTTCTACCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAGAAAATTACCGAGCCAGATCCGGACTTGTTTTCTGAAAACAAATCTGTTATCAACACCTTCCACAGAAGATTTGAACTCAAGGAGAACCCAAAGCTTAAGAAATCGAGAAGGCATTATTTACGTGAAAAAGCATCAGGTTCAAGCGATAAAGAGGACAATGAAGAGATTTCTGCTCAAATCGTCGAGTCTGTTGCCAATATGCCTACAGTTAAAGTCGAAAAGATTGGAGATTCAACTCCTCTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAATGGATCAGTAAAGCAATCAGTGGCATGACAACCAAAATATTCGATCTTATCGAGAACTCCTCCGATCGGGATAGCTACACAAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTTCTCCGCCATCTCCGTAACTTTTGCCCCCAAAAAAACCTCAATACGTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCTGCTGACAGCGAAGTAGGTGATGATGAAGCTAGAAGATTTTGGGTTAAAATGGAGCCTAAATCAGAGCAAAAATGCTCCAACGATTCGTCAACGTCTTCGAACCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATCAAGTCCAGATTTTGAGAGCCTAAATCCTCTTAAGTATGTTCCTATATTAGTAGATGGTCCTGTGGTAGTTTCAGATTCGTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCGCCTGATCTTCGGTTAAAATCTCTTCATTTTCAAGTGGCAAGTATAGTCAGCTCAAGCATACAACCTCTTATTATGTTGGAATTGCTGAAAACCATCGGGGAAAAATTTGGACCAGAAGAGCCGCTGCCATGGGCACAATCCAATTTAGTAAAAGGCTTCAATGCTGTTGAGAAACTGCTGAAGGATTTTTCTGGCCAATATGCCTTGGGAGATGAAGTACATATGGCTGATGTATTTTTGGCTCCCCAAATTTCAAGTGCTATTGAGAACTTCGGTATTGACATGTCAGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAACCCCACGGTGGGCGGAGGTGGTATTCCAGACATTTTTTAA 2721 42.48 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLLYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQKMKVVDGDLVDVLKHIPRGTVSGDFLDAIIVGMDMLIKKFGETERGKKRLCLVTDALFPIKEPYEGTKEDQVTTIAQQMTKHGIRMDSVIVRGSFGQDAIEKTMNENDLLLNIFSRKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGNLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPLTDKFATHEVKVDYEYKSAEEPSKVVPPELRIKGYRYGPQVVPISTAEWDAVKYKTEKSVKLLGFTNALNIMRHYYMKDVNVFIAEPGNTRSIIAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEKDGIADSLFFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQEAADDFVKMLDLAPDGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSENKSVINTFHRRFELKENPKLKKSRRHYLREKASGSSDKEDNEEISAQIVESVANMPTVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAISGMTTKIFDLIENSSDRDSYTKAIEYLRALRKGCIIEQEPKQFNDFLRHLRNFCPQKNLNTFCEFLASQQISLISKEEAADSEVGDDEARRFWVKMEPKSEQKCSNDSSTSSNLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQSSPDFESLNPLKYVPILVDGPVVVSDSYAILLYLEEKYPQKALLPPDLRLKSLHFQVASIVSSSIQPLIMLELLKTIGEKFGPEEPLPWAQSNLVKGFNAVEKLLKDFSGQYALGDEVHMADVFLAPQISSAIENFGIDMSVERKALNLVVVGSNPTVGGGGIPDIF* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1613829 1623700 + Chy6G107700.1 Chy06g00242 227951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00242 906 Pfam Ku C terminal domain like 566 681 IPR014893 -
Chy06g00242 906 Gene3D - 216 419 IPR016194 -
Chy06g00242 906 CDD GST_N_Zeta 702 774 IPR034333 -
Chy06g00242 906 SUPERFAMILY SPOC domain-like 215 518 IPR016194 -
Chy06g00242 906 Gene3D - 783 889 - -
Chy06g00242 906 MobiDBLite consensus disorder prediction 522 541 - -
Chy06g00242 906 Pfam Ku70/Ku80 C-terminal arm 452 534 IPR005160 GO:0003677|GO:0003678|GO:0006303
Chy06g00242 906 Pfam Ku70/Ku80 beta-barrel domain 226 431 IPR006164 GO:0003677|GO:0006303
Chy06g00242 906 SUPERFAMILY Thioredoxin-like 700 784 IPR036249 -
Chy06g00242 906 SUPERFAMILY C-terminal domain of Ku80 545 685 IPR036494 -
Chy06g00242 906 SFLD Main (cytGST) 702 879 - -
Chy06g00242 906 SUPERFAMILY vWA-like 4 232 IPR036465 -
Chy06g00242 906 Gene3D - 423 519 - -
Chy06g00242 906 Pfam Glutathione S-transferase, N-terminal domain 704 780 IPR004045 -
Chy06g00242 906 PANTHER KU AUTOANTIGEN DNA HELICASE 4 670 - -
Chy06g00242 906 Gene3D von Willebrand factor, type A domain 1 200 IPR036465 -
Chy06g00242 906 SUPERFAMILY GST C-terminal domain-like 782 880 IPR036282 -
Chy06g00242 906 TIGRFAM maiA: maleylacetoacetate isomerase 704 880 IPR005955 GO:0003824|GO:0005737|GO:0009072
Chy06g00242 906 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 786 906 IPR010987 -
Chy06g00242 906 SMART ku_4 278 419 IPR006164 GO:0003677|GO:0006303
Chy06g00242 906 Gene3D Glutaredoxin 704 780 - -
Chy06g00242 906 Gene3D - 534 685 IPR036494 -
Chy06g00242 906 CDD KU80 216 517 IPR024193 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0006310|GO:0042162|GO:0043564
Chy06g00242 906 SFLD Glutathione Transferase (cytosolic) 702 879 IPR040079 -
Chy06g00242 906 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 4 670 - -
Chy06g00242 906 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 159 IPR005161 -
Chy06g00242 906 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 700 781 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00242 Chy-Chr6:1613829 Chy11g00028 Chy-Chr11:374576 8.22E-60 dispersed
Chy06g00242 Chy-Chr6:1613829 Chy10g00997 Chy-Chr10:15434043 8.80E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00242 K10885 - csv:101217407 1321.99