Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00257 ATGCCCTTCCCCTTCACTACATTTCTCCTTCTCCTTTTCCTACCCTTTGTGGCTTCTTCTAATTTTTCGTTGCCTGCGCTGGACTCGGTTCGGTTGGCGCAGACCGGGGTTAGGGAAGCCATAAACGAAATTGGTAATTTAAAACGACGTCGGTTTGGAGATTGGAATCTGCAGGCCGCGCTTCGTGATTGCGCTACGCTCTATGAGGAGGCCGAGTGGCGGCTCGCGGGGATGTTGGTTGGAGAGAATAAGTATAGGGCGGAAGATGGTCGGATGTGGGTCAGCGCCGCCATGGCTAACCATCGGAGTTGTTTGGATGGGTTGGAAGAGGTCCATGATGGGGCGGCGGTGGATGGGAATAACTTGACGGTGATGCTCATTGGAGCTCTGCGTTTATACGATAAGATTGCTGCCGTGGAGAAGCGGAACGGACGGAAAAGATTGGGGAAACGGAAATGGAGAGAAAACAGAGGAACCAACTTGGCAACGTGGAACCCGGCGACGTCGAAGGCGGACTATGTGGTGGCTAAGGATGGATCCGGCACCCACACAACCATAAACAGGGCGGTGGCGGCTCTGGCGAGAACTGGACGGACAGGGCGAGGAAGGAGAATTGTGATATACGTGAAAGCTGGAGTTTACAGGGAGAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGCTTGTTGGCGACGGCATAGACAAAACCATCGTCACTGGTAGCCGCAATGTACCCGACGGCGCCACCACTTATAACTCAGCTACATTCGGCGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACATTCGAGAACACCGCCGGACCGGGAAAGCAACAAGCGGTGGCGCTACGGCTCAATTCCGACCTTGCCGTCGTATACCGGTGCGCAATAAAAGGCTATCAAGACACCCTCTTCCTCCACTCCCTTCGCCAATTCTACCGCGACTGCAAAATCTATGGCACCATCGACTTCATCTTTGGCAACTCGGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACAGCCGATTCGCCACCAAGCCAACATGATAACCGCCCAAGGCCGCGACGATCCGGCAGAGGCCACCGGAATTTCGATCCTCAACTCCAGAGTCCAGCCGACACCGGATTTTGCCCCCGTAAAGGCTCAGTACAGGACGTACCTCGGCCGCCCCTGGAAGCGGTTCTCGAGGGCGGTGGTAATCGCGACGGATTTGGACGGGTTGATTGATCCGAAAGGGTGGGGAGAATGGACAGGGGATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTTAAGAACAGGGGCGACGGTTCTTCGACGAGATTTAGGGTAAATTGGCCGGGATTTCACATCCTCCGTTCCGCGGAGGAAGCGCGTCCTTTCACGGTTGCTGAGTTTCTTCACGGCGGCGATTGGATTCCGGCATCCGGCGTTCCTTTCGAGGCGGGAGTTTGA 1464 54.85 MPFPFTTFLLLLFLPFVASSNFSLPALDSVRLAQTGVREAINEIGNLKRRRFGDWNLQAALRDCATLYEEAEWRLAGMLVGENKYRAEDGRMWVSAAMANHRSCLDGLEEVHDGAAVDGNNLTVMLIGALRLYDKIAAVEKRNGRKRLGKRKWRENRGTNLATWNPATSKADYVVAKDGSGTHTTINRAVAALARTGRTGRGRRIVIYVKAGVYRENVEIGIQLKNVMLVGDGIDKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPGKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCKIYGTIDFIFGNSAAVLQNCEIFVRQPIRHQANMITAQGRDDPAEATGISILNSRVQPTPDFAPVKAQYRTYLGRPWKRFSRAVVIATDLDGLIDPKGWGEWTGDFAISTLFYAEFKNRGDGSSTRFRVNWPGFHILRSAEEARPFTVAEFLHGGDWIPASGVPFEAGV* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1725734 1727623 - Chy6G107850.1 Chy06g00257 227966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00257 487 Pfam Pectinesterase 172 472 IPR000070 GO:0030599|GO:0042545
Chy06g00257 487 ProSitePatterns Pectinesterase signature 2. 320 329 IPR033131 -
Chy06g00257 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 134 IPR035513 -
Chy06g00257 487 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 6 486 - -
Chy06g00257 487 PANTHER PECTINESTERASE 6 486 - -
Chy06g00257 487 Pfam Plant invertase/pectin methylesterase inhibitor 29 113 IPR006501 GO:0004857
Chy06g00257 487 Gene3D - 166 487 IPR012334 -
Chy06g00257 487 SUPERFAMILY Pectin lyase-like 167 485 IPR011050 -
Chy06g00257 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 12 114 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00257 Chy-Chr6:1725734 Chy09g00837 Chy-Chr9:11150722 6.31E-144 dispersed
Chy06g00257 Chy-Chr6:1725734 Chy06g00258 Chy-Chr6:1740315 7.65E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00257 K01051 - csv:101217635 903.279