Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00258 ATGGCAAGACACTCAATCGTGTTTCTCGTTGTTCTTATTGTTCTTATTTTTCCGACAGACATTTTATGTTATTCGGAAAAAGAAATAAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGTGAAGAATTTCTCAAAACCAAAGCTACTACAAAGAAAACTCCAATAACCACAAAATCCCATTTCTTTGAAATCTTAGTCGAAACGGCACTAGAGCGTGCCGTTTCAGCCCATAAAAATGCTCTTTCTCTCGGCCCAAAATGCCGAAATTCCAAAGAAAAAACTGCATGGACCGATTGCGTTGACCTCTACGACCAAATCATAACCCGACTCAACCGAACCTCTGCCCGCTGCTCACCAGCCGACGCTCAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAAGAACTCGGGCTTTCGGCTTTCGGTTACCCATTGACGGCTAATAATGTTTCCAAGCTGATCAGTGATGGGTTGTCGGTGAATAAACCCGCGTCACCGGAGGGGTATGAGCCTACGACCATGACGGATGGGTTTCCCACGTGGGTTAGGCCTGGTGACCGTAAATTGCTGCAATCTGGGTCTCCGAAGGCGGACGTAGTGGTGGCGCAAGATGGGTCGGGGAATTTTAAGACGGTGAAGGATGCTATCTCCGCCGCAAAGGGCGGTGGGAGATTTGTGATATATGTAAAGTCGGGGGTTTATAATGAGAATTTGGATATTAAGGCTAAGAATGTTATGATGGTCGGCGACGGAATTGGAAAAACTATCATTACCGGCAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCTGCTACCGTTGCCGTTGATGGAGACGGATTCATCGCCAGAGACATAACTTTCAGAAACACCGCCGGAGCAAAGAACCACCAAGCGGTAGCGCTCCGATCAGGTTCAGATCTCTCAGTCTTCTACCGTTGCGGCTTCGAAGGCTATCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAATGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGTGATCCTCCGAACAAAACCATCACCCTCACCGCCCAAGGCCGCTCCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCCGAATCACATCCTCTGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCATGGAGGCAATATTCCCGGACGGTTGTTATGAAGTCCTCGATCGGAGGATTCATAAGTCCGGCGGGGTGGATGCCGTGGAGCGGTAATTTTGCTCTAAATACGCTGTATTACGCCGAGTATATGAATACGGGGCCGGGAGCGTCGACGGCGAATCGGGTGAACTGGAAGGGTTATCATGTGATTACCAGTGCGTCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGGTCTTGGTTGCCGAGTACGGGTGTGCCTTTCACTTCCGGTCTCTAA 1530 50.78 MARHSIVFLVVLIVLIFPTDILCYSEKEIKNWCSQTPYPAPCEEFLKTKATTKKTPITTKSHFFEILVETALERAVSAHKNALSLGPKCRNSKEKTAWTDCVDLYDQIITRLNRTSARCSPADAQTWLSAALTALETCRTGFEELGLSAFGYPLTANNVSKLISDGLSVNKPASPEGYEPTTMTDGFPTWVRPGDRKLLQSGSPKADVVVAQDGSGNFKTVKDAISAAKGGGRFVIYVKSGVYNENLDIKAKNVMMVGDGIGKTIITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRITSSGGLSGVKAYLGRPWRQYSRTVVMKSSIGGFISPAGWMPWSGNFALNTLYYAEYMNTGPGASTANRVNWKGYHVITSASEASKFTVGNFIAGGSWLPSTGVPFTSGL* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1740315 1745251 + Chy6G107860.1 Chy06g00258 227967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00258 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Chy06g00258 509 PANTHER PECTINESTERASE 6 508 - -
Chy06g00258 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Chy06g00258 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 149 IPR006501 GO:0004857
Chy06g00258 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 165 IPR006501 GO:0004857
Chy06g00258 509 Gene3D - 202 509 IPR012334 -
Chy06g00258 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Chy06g00258 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Chy06g00258 509 CDD PMEI-like_3 32 174 - -
Chy06g00258 509 PANTHER PECTINESTERASE 6 508 - -
Chy06g00258 509 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Chy06g00258 509 SMART PMEI_2 24 169 IPR006501 GO:0004857
Chy06g00258 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00258 Chy-Chr6:1740315 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy06g00257 Chy-Chr6:1725734 Chy06g00258 Chy-Chr6:1740315 7.65E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00258 K01051 - csv:101217552 996.112