Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00280 ATGGCGGGTTTAGACTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCATCGTTCCGTGGATCTCCACCTCCAACATCAGACCGATGTAGACGACGGTTCCGACCACCAACCTAACTCCGGCGGAGAGATCGTTGCCCGCCGGTCCAGAGGTAGACCGCCCGGTTCCAGGAATAAACCCAAACCACCGGTTATTATTACCAGAGAAAGCGCTAACACTCTTCGGGCCCACATCTTGGAAGTCAACACCGGTTGTGATGTCTTTGACTCCGTCGCCACTTATGCCCGGAAACGCCAGCGTGGCGTCTGCATCTTGAGCGGCACCGGCGCCGTTACTAACGTTACCTTACGGCAACCTTCATCAACCGGCGGCGCTATTACTCTTCCTGGAAGGTTTGAGATATTATCTTTAACGGGATCGTTTTTACCGCCACCGGCACCTCCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGGCAAATCGTCGGAGGAAATGTTGTCGGGTCTTTGATTGCTTCGGGACCGGTGATCGTCATTGCGTCGTCTTTTACCAATGTTGCTTACGAGAGGTTACCATTGGACGAGGAGGAACAACCGTCCAACGGTGGTGGTGGTGGGAGTCTTAGCAACCCGTTTCCGGACCCGTCGGTCGGGTTGCCGTTGTTTAATATGCCTTCGTCGAACATGGCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGAGGAGGGAATTCCGGTGGGAGAGCATCTTATTGA 771 54.35 MAGLDLGSASHFVHQLQHRSVDLHLQHQTDVDDGSDHQPNSGGEIVARRSRGRPPGSRNKPKPPVIITRESANTLRAHILEVNTGCDVFDSVATYARKRQRGVCILSGTGAVTNVTLRQPSSTGGAITLPGRFEILSLTGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEQPSNGGGGGSLSNPFPDPSVGLPLFNMPSSNMAGNQNQLPVDGWGGGNSGGRASY* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1884621 1885650 + Chy6G108080.1 Chy06g00280 227989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00280 256 ProSiteProfiles PPC domain profile profile. 72 208 IPR005175 -
Chy06g00280 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Chy06g00280 256 MobiDBLite consensus disorder prediction 29 64 - -
Chy06g00280 256 Gene3D - 75 203 - -
Chy06g00280 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 256 IPR014476 GO:0003680
Chy06g00280 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 189 IPR005175 -
Chy06g00280 256 MobiDBLite consensus disorder prediction 225 244 - -
Chy06g00280 256 CDD DUF296 76 185 IPR005175 -
Chy06g00280 256 MobiDBLite consensus disorder prediction 199 256 - -
Chy06g00280 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 22 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01527 Chy-Chr2:13174959 Chy06g00280 Chy-Chr6:1884621 1.15E-42 dispersed
Chy03g01303 Chy-Chr3:16017193 Chy06g00280 Chy-Chr6:1884621 1.60E-51 dispersed
Chy05g00341 Chy-Chr5:3529987 Chy06g00280 Chy-Chr6:1884621 1.58E-67 dispersed
Chy06g00234 Chy-Chr6:1550149 Chy06g00280 Chy-Chr6:1884621 8.20E-73 dispersed
Chy06g00280 Chy-Chr6:1884621 Chy09g01146 Chy-Chr9:13721525 5.94E-66 dispersed
Chy01g00563 Chy-Chr1:4028642 Chy06g00280 Chy-Chr6:1884621 9.33E-59 transposed
Chy02g02320 Chy-Chr2:27206468 Chy06g00280 Chy-Chr6:1884621 5.02E-74 transposed
Chy03g00140 Chy-Chr3:1282191 Chy06g00280 Chy-Chr6:1884621 5.71E-64 transposed
Chy11g01953 Chy-Chr11:25567509 Chy06g00280 Chy-Chr6:1884621 7.03E-109 wgd
Chy04g00082 Chy-Chr4:850886 Chy06g00280 Chy-Chr6:1884621 8.38E-105 wgd
Chy06g00280 Chy-Chr6:1884621 Chy06g02135 Chy-Chr6:25683354 7.18E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00280 - - csv:101220959 447.203