Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00300 ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAACTCAATTCAAATAAACAATCACAGCCTTCCATGTTCGGAATCCAACACTTCTTCGAACGACACTCTCAAAATGTTTCGCATTCTCAGAAGATTTCTTCACAAACTTCCGATTCGAAGACTGATGTTTCCAACTCAATGAATCGTGGAGATGATCGGAATATGGGACGGTTAGATTCTAAGGACGCGGCTGGGGCTGCGGCGGCGACAGCTCAGAAGTCAGAGTCGAGGGTGCTTCTTGTGAGTGATGCGGTTTTAGCTTCTGAAAACCCTAAGGTACTGCAGAGGAATGATGCTAGTTGTTCGCCTCTGAATACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATCATGGCGATGACTCTTCTAACGAGCTCTCTCCAGAATTTTCCAAGTCCGTTTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGTCAGGACGAGGGGACTAGAACTGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGCCGGAGACTATAAGAGTTTTGGCGAACTCATCAAGGCTAAGCTCTTTGAGAATTAGACAGTGTTCACGAAACAAGACTTCCTCTGTCGAGTCTGGGAACTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAATAGCTTCGTTAAATAAGACTGGATTGAAAAGGGTAAATCCTAAGCATGACGTGGAACCCAATGGAGTTGTGAATGATAGTTTGAGTAGCTCTAGAGTAGCTAATAGTCCGAGTCGATTCCAGACGCCCCCATCTTTGTCATACTGCGACAAGGGTTCCAATGATGTTGCTGCATGTAATGAAGCACCTGATCATCCTATTTTAAGACCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTGCCGTTGATACAGTGGCTTCTTCTATTGACTTGGGGGACGATTCATCTGAATTAAAAGGTAGAAATGGTAACACATTGACTGCCAGAGTTGATTCAGACACTGTAATGAAGGCATGCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATATGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAACAAAGTGGAGAAGAACGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCTCCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATGTTGACCGCGACAATAATTTCGTTATCCTACACCCCGATATACTAGTGTCAGGAACTCGGGTTGCTGGTCATTTGACCTGTCCAAGGAGGAGTATTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCTGTTGCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCGACTGTAGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATAGAAAATGTGTATGCATGCGGAGCAAATGAAAAGGATATACGCATAACCATGAATGAAGCAGTTCCAAAAATTTTACATTGGATCGGCATGTTCAAAGGCCCAATGGGTTCTAAAGCACCTTCTATTGAGTTTAGATCTGAGGATGATCCCAGGAAAGTTAGTATATCAGAGGTGATTGATATTGAGGAGATGGCTTGGGCTCCCAAATATGGTTTGAAAGGAATAATTGATGCTTCCGTCAGGGTAAATGTAATGTCAGATTATAATAAATGTGCCGTGAATGTCATGCCTTTAGAGTTTAAAACTGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGCGCCCAAGTGATCTTGTACACACTACTTATGTCTGAGAGGTATCAAAAACATGTTGGTTATGGTCTCCTGTACTATCTTCGGTCAAATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATCACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGCACCATTTATCATAAGATGCAAAATGGAAGCAAAGAGACCAGTGGGCTTGGAGTCTTATTTGAATCCCATACAGATCACTTGCAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCAAAGGAGATGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTACAGATAAAAATCAAACGTCTATCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAGAAGGACAACCGAATCAGCTATCGTTTTGTGCATCAAGATTCAAATAATGATAGTTCAAACACTGCTTCAATAAATGACATGGACAGTTCACTTAGAGTTGGTGACTATGTGATACTCAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGTCTCCATGTATCCGTTTCTTTTTCTAAGCGTCTACGTCTTCCTGGAAGCACTTCTTCTACAGAAGCACGTGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCATTTGCAGTCATGAGGTTTAATCTCGTACAACTGTTTCTGCAAGGTGAGCAAAATGCTCATCTTAGGAAGTTGATAGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATTTGGTCAGAGAAGAATTTAAATGATGACCAACGGCGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCCCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCTATTTTGCTCACGTCCTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCATGAAGACATTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAAAATGAGATTGGACCAAGTGCAAGTTGTTGCAGTTACCTGTTTGGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACTCTTCCGGTTTCCCTTGGGCCTTTGATGTTTGCTTCTACATTTGTCCTTGTTGGCGATCACTATCAGTTGCCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAGTTTCTGCTTTACAAAGCCAGTATCGCATGTGCCGAGACATTATGGAGTTATCAAATGCCTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCGAATGCAAAGCTTGAATTTTCAAGTTCAAAGTTTTCTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTGTTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAATCCAATTGAAGCTAACATATTAGCGGAGGTGACGAAAGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGGATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTCTAGCTATCAACATTGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGACAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGCGAAAATCCAAAGAGCTGTACTACCTCACTCCTTGGAGACTGGCATCGAATTAACGTAGCCATTACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACCCTATCAAAAGTTCCATTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATATTAAATGTAACAAGGAATGATATACTACATCAAAGCAACAATCTCCCTAGTTGCACATAG 4116 42.23 MPPRKKPHSSSKKLNSNKQSQPSMFGIQHFFERHSQNVSHSQKISSQTSDSKTDVSNSMNRGDDRNMGRLDSKDAAGAAAATAQKSESRVLLVSDAVLASENPKVLQRNDASCSPLNTTPENLIAACGNHGDDSSNELSPEFSKSVSLKRFKFSPGMLIKQSQDEGTRTDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVESGNFEQLSSPNPKPSERSIASLNKTGLKRVNPKHDVEPNGVVNDSLSSSRVANSPSRFQTPPSLSYCDKGSNDVAACNEAPDHPILRPHKKALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGNTLTARVDSDTVMKACPCDFLVLEVTEKCELADTYGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDRDNNFVILHPDILVSGTRVAGHLTCPRRSILDERLKSNEQSVAALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSIENVYACGANEKDIRITMNEAVPKILHWIGMFKGPMGSKAPSIEFRSEDDPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSDYNKCAVNVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSNQTQGIRVQRSDLVGLIMRRNELANNILKASTAQSLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFESHTDHLQASHGIFFQHWERLIDLEAKEMELVKRGVWHSRSTDKNQTSICLSSIVLSTLDDQPHCTFEKDNRISYRFVHQDSNNDSSNTASINDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHVSVSFSKRLRLPGSTSSTEARDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIKMRLDQVQVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAVSALQSQYRMCRDIMELSNALIYGDRLRCGSEETANAKLEFSSSKFSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGNEVGIITPYNSQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILNVTRNDILHQSNNLPSCT* 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2006618 2019794 - Chy6G108280.1 Chy06g00300 228009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00300 1371 Pfam DNA replication factor Dna2 396 598 IPR014808 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 214 245 - -
Chy06g00300 1371 CDD SF1_C_Upf1 1154 1347 IPR041679 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 261 284 - -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 214 284 - -
Chy06g00300 1371 CDD DEXXQc_DNA2 953 1153 - -
Chy06g00300 1371 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 2 1364 - -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 13 63 - -
Chy06g00300 1371 Gene3D - 451 715 IPR011604 -
Chy06g00300 1371 PANTHER DNA2/NAM7 HELICASE FAMILY 2 1364 IPR045055 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 1 86 - -
Chy06g00300 1371 Pfam AAA domain 1054 1121 IPR041677 GO:0004386
Chy06g00300 1371 Pfam AAA domain 953 1045 IPR041677 GO:0004386
Chy06g00300 1371 Pfam AAA domain 1131 1330 IPR041679 -
Chy06g00300 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 952 1340 IPR027417 -
Chy06g00300 1371 Gene3D - 1152 1366 IPR027417 -
Chy06g00300 1371 Gene3D - 889 1151 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00300 Chy-Chr6:2006618 Chy09g00939 Chy-Chr9:12151728 7.51E-40 dispersed
Chy06g00300 Chy-Chr6:2006618 Chy06g02112 Chy-Chr6:25330110 5.21E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00300 K10742 - csv:101220726 2595.46