Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00300 ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAACTCAATTCAAATAAACAATCACAGCCTTCCATGTTCGGAATCCAACACTTCTTCGAACGACACTCTCAAAATGTTTCGCATTCTCAGAAGATTTCTTCACAAACTTCCGATTCGAAGACTGATGTTTCCAACTCAATGAATCGTGGAGATGATCGGAATATGGGACGGTTAGATTCTAAGGACGCGGCTGGGGCTGCGGCGGCGACAGCTCAGAAGTCAGAGTCGAGGGTGCTTCTTGTGAGTGATGCGGTTTTAGCTTCTGAAAACCCTAAGGTACTGCAGAGGAATGATGCTAGTTGTTCGCCTCTGAATACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATCATGGCGATGACTCTTCTAACGAGCTCTCTCCAGAATTTTCCAAGTCCGTTTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGTCAGGACGAGGGGACTAGAACTGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGCCGGAGACTATAAGAGTTTTGGCGAACTCATCAAGGCTAAGCTCTTTGAGAATTAGACAGTGTTCACGAAACAAGACTTCCTCTGTCGAGTCTGGGAACTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAATAGCTTCGTTAAATAAGACTGGATTGAAAAGGGTAAATCCTAAGCATGACGTGGAACCCAATGGAGTTGTGAATGATAGTTTGAGTAGCTCTAGAGTAGCTAATAGTCCGAGTCGATTCCAGACGCCCCCATCTTTGTCATACTGCGACAAGGGTTCCAATGATGTTGCTGCATGTAATGAAGCACCTGATCATCCTATTTTAAGACCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTGCCGTTGATACAGTGGCTTCTTCTATTGACTTGGGGGACGATTCATCTGAATTAAAAGGTAGAAATGGTAACACATTGACTGCCAGAGTTGATTCAGACACTGTAATGAAGGCATGCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATATGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAACAAAGTGGAGAAGAACGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCTCCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATGTTGACCGCGACAATAATTTCGTTATCCTACACCCCGATATACTAGTGTCAGGAACTCGGGTTGCTGGTCATTTGACCTGTCCAAGGAGGAGTATTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCTGTTGCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCGACTGTAGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATAGAAAATGTGTATGCATGCGGAGCAAATGAAAAGGATATACGCATAACCATGAATGAAGCAGTTCCAAAAATTTTACATTGGATCGGCATGTTCAAAGGCCCAATGGGTTCTAAAGCACCTTCTATTGAGTTTAGATCTGAGGATGATCCCAGGAAAGTTAGTATATCAGAGGTGATTGATATTGAGGAGATGGCTTGGGCTCCCAAATATGGTTTGAAAGGAATAATTGATGCTTCCGTCAGGGTAAATGTAATGTCAGATTATAATAAATGTGCCGTGAATGTCATGCCTTTAGAGTTTAAAACTGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGCGCCCAAGTGATCTTGTACACACTACTTATGTCTGAGAGGTATCAAAAACATGTTGGTTATGGTCTCCTGTACTATCTTCGGTCAAATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATCACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGCACCATTTATCATAAGATGCAAAATGGAAGCAAAGAGACCAGTGGGCTTGGAGTCTTATTTGAATCCCATACAGATCACTTGCAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCAAAGGAGATGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTACAGATAAAAATCAAACGTCTATCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAGAAGGACAACCGAATCAGCTATCGTTTTGTGCATCAAGATTCAAATAATGATAGTTCAAACACTGCTTCAATAAATGACATGGACAGTTCACTTAGAGTTGGTGACTATGTGATACTCAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGTCTCCATGTATCCGTTTCTTTTTCTAAGCGTCTACGTCTTCCTGGAAGCACTTCTTCTACAGAAGCACGTGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCATTTGCAGTCATGAGGTTTAATCTCGTACAACTGTTTCTGCAAGGTGAGCAAAATGCTCATCTTAGGAAGTTGATAGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATTTGGTCAGAGAAGAATTTAAATGATGACCAACGGCGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCCCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCTATTTTGCTCACGTCCTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCATGAAGACATTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAAAATGAGATTGGACCAAGTGCAAGTTGTTGCAGTTACCTGTTTGGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACTCTTCCGGTTTCCCTTGGGCCTTTGATGTTTGCTTCTACATTTGTCCTTGTTGGCGATCACTATCAGTTGCCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAGTTTCTGCTTTACAAAGCCAGTATCGCATGTGCCGAGACATTATGGAGTTATCAAATGCCTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCGAATGCAAAGCTTGAATTTTCAAGTTCAAAGTTTTCTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTGTTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAATCCAATTGAAGCTAACATATTAGCGGAGGTGACGAAAGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGGATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTCTAGCTATCAACATTGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGACAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGCGAAAATCCAAAGAGCTGTACTACCTCACTCCTTGGAGACTGGCATCGAATTAACGTAGCCATTACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACCCTATCAAAAGTTCCATTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATATTAAATGTAACAAGGAATGATATACTACATCAAAGCAACAATCTCCCTAGTTGCACATAG 4116 42.23 MPPRKKPHSSSKKLNSNKQSQPSMFGIQHFFERHSQNVSHSQKISSQTSDSKTDVSNSMNRGDDRNMGRLDSKDAAGAAAATAQKSESRVLLVSDAVLASENPKVLQRNDASCSPLNTTPENLIAACGNHGDDSSNELSPEFSKSVSLKRFKFSPGMLIKQSQDEGTRTDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVESGNFEQLSSPNPKPSERSIASLNKTGLKRVNPKHDVEPNGVVNDSLSSSRVANSPSRFQTPPSLSYCDKGSNDVAACNEAPDHPILRPHKKALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGNTLTARVDSDTVMKACPCDFLVLEVTEKCELADTYGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDRDNNFVILHPDILVSGTRVAGHLTCPRRSILDERLKSNEQSVAALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSIENVYACGANEKDIRITMNEAVPKILHWIGMFKGPMGSKAPSIEFRSEDDPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSDYNKCAVNVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSNQTQGIRVQRSDLVGLIMRRNELANNILKASTAQSLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFESHTDHLQASHGIFFQHWERLIDLEAKEMELVKRGVWHSRSTDKNQTSICLSSIVLSTLDDQPHCTFEKDNRISYRFVHQDSNNDSSNTASINDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHVSVSFSKRLRLPGSTSSTEARDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIKMRLDQVQVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAVSALQSQYRMCRDIMELSNALIYGDRLRCGSEETANAKLEFSSSKFSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGNEVGIITPYNSQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILNVTRNDILHQSNNLPSCT* 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2006618 2019794 - Chy6G108280.1 Chy06g00300 228009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00300 1371 Pfam DNA replication factor Dna2 396 598 IPR014808 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 214 245 - -
Chy06g00300 1371 CDD SF1_C_Upf1 1154 1347 IPR041679 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 261 284 - -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 214 284 - -
Chy06g00300 1371 CDD DEXXQc_DNA2 953 1153 - -
Chy06g00300 1371 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 2 1364 - -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 13 63 - -
Chy06g00300 1371 Gene3D - 451 715 IPR011604 -
Chy06g00300 1371 PANTHER DNA2/NAM7 HELICASE FAMILY 2 1364 IPR045055 -
Chy06g00300 1371 MobiDBLite consensus disorder prediction 1 86 - -
Chy06g00300 1371 Pfam AAA domain 1054 1121 IPR041677 GO:0004386
Chy06g00300 1371 Pfam AAA domain 953 1045 IPR041677 GO:0004386
Chy06g00300 1371 Pfam AAA domain 1131 1330 IPR041679 -
Chy06g00300 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 952 1340 IPR027417 -
Chy06g00300 1371 Gene3D - 1152 1366 IPR027417 -
Chy06g00300 1371 Gene3D - 889 1151 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00300 K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-] - csv:101220726 2595.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00300 Chy-Chr6:2006618 Chy09g00939 Chy-Chr9:12151728 7.51E-40 dispersed
Chy06g00300 Chy-Chr6:2006618 Chy06g02112 Chy-Chr6:25330110 5.21E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007869 2 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00300 Chy_Chr06 FPKM 39.374268 46.499119 4062.390137 3851.877686 721.300659 761.226929 696.668762 4015.453857 4504.858887 4213.416992