Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00358 GTTTCTTCTATTAAGAATGGGATGTGGGACAGCATTTATGATTCTCTACAAATTATCAATCTACCTGAATTAACTAATACAAATGTCGAGAAACAACCAGTGTATGACTGCATAGATGTCGGTCCAAGTGCGGAGGGTGCTCTTATAAAGCATGTTCCAAAGTCCACACATGACATCACCGTGGAAGATATCCTCAATAAAGTTGGTCAGCACATCAAGTTTGAGCAGGAGATTCGCAGCGATGGTCGACTTCTCCTGGAAAATAAAATTCACATTTTGAAACAGCTCTGCAGCTGTGAGTTCTGGCTTGTGGAGCAATATTCTGCCAAGGATTTTAAGTCTCTTGGTCACGGGGACTTTTTCAGTTTCTTACAGAAGCATGCGTCTATGCTCCCTGATGAGTTACACAAGTTTCTTGTGCCTGAGATTTCTGAAAGATCCCCTTTGGAGGCTTGCATGCTACAGCGTCAGTTAGTGACTTTGGTATCACAAGCTTGTAATAACTTATCCGAGAATGAAATAATAAGTAAGCAGATGATATATAACCTTCTTACTCAGCAATTTCCCTTGATCGGCTTCAAACTTACTGAAAATGGGCCTTTGGAAGATTTTATGGAGCTTGTGGGGCAGCAAAAGAACAGTGTTGTTTCAAAGTGTGTCACATTTTCTGTTTCATTATTAGGGGGATCTCATTTAAGAGATTCTTTGGCCACAATGGATAATGATTCCCTCGGTGCCACATCATTCTCTGCTGAAGCTGGACAAGAATTGGGGGCCATTAAATCTGTGACATCAGAGGATGCTATCAAAGTCTTGGTTAGAGCACCGATGTTGTTGGATTTGAACTTATGGTCTCATTGGGATCTCTTATTTGCTCCAGCTCTTGGTCCTCTTGTACCCTGGTTGCAGAAGGAAGTTAATATAGAAAACTTTATGTGTATGGTTACCAAAGAAGGGAAAGTTATACGAATAGATCACACAGCTACTGCCGATTCATTCTTGGAAGCTGCACTGCAAGGATCTCCATTTCATACTGCAGTGAAGCTTTTGTCTATCTTCGCTTTACTTGGTGGAGAAAAATATGTTCTCTTATCCCTACTTAAGCACCATGCCAGTCGTGCTTTTGAAGTTATTATTAAGAACTCTGTTGAAAACATAGAAATGTTCGAAAATTGGGGTCAAGGGCTTGAAAAGGTGGCCTTTCATCAGAACTTCACCGAGCAGGTTGCAGCTGGTAATTTGAGTCTTGAATTGAAGAAGAAGATTGATATGAGGAACAAAGCAATTTCCTTGTTGTCTAGGTTTTTTGTTGACTGCCTTGGTTATATACCAGTAGAGTTTCGTTACTTGGCTGCAAATATATTGCTTTCTGGCATAACTTCTGTCGTTAAAGATGCTGCATCAGCTATTTTACATGAGTGTTGGAAACCAGAGCAGCGTCTAATGCTTCATGAGATAGGCCTCTCTCTTGGTGTGCCTGAGTGGATTCAGGACTATGACACAGTTTCTTCTAGTGCTTCAGATCTGTTCACTGATGCATGCTTGAATGATAGGTCTGAGATAAAGAGAAATGTACACAGAGATGGTCTTTTGACTAAGTATTCTACTTCAGAACAAAATGCTTCTTTCTCTATTGAAGAGAACGTGTGTAATGAAAAATTAAGTGTTTCTAGTGCAAACTGTACTACCAAAACTTTTCATGATGCAAATGGCCTCAGTTGTATGTCACTTGCTTCAGAACCTGATGGAAATAAGGATGCGGCTGAGATTATCCAATGCATCAGGCGTGATGAATTTGGTCTTGATCTTGATCTTCCCATTTCTGAGACTGGTATGTTGCGGAAGCAGCATGCTCGTTTAGGAAGAGCTCTTCACTGTCTTTCACAGGAACTGTATTCTCAGGATTCACACTTTCTGCTTGAGCTGGTTCAAAATGCTGATGATAATATCTATCCACAAAGTGTCGAACCCACTCTAGCATTCATTTTTGAGGAGTCAGGAATTGTTGTTTTAAATAACGAGGAAGGCTTCTCTGCTAAAAATATCAGAGCACTCTGTGATGTTGGAAATTCCACAAAGAAAGGATCTAATGCTGGATATATAGGAAAGAAAGGCATTGGCTTCAAATCAGTTTTTCGGATCACAGATGCTCCTGAGATTCATTCCAATGGGTTTCATGTTAAGTTTGATATACGCGAGGGGCAGATTGGGTTTGTCTTGCCAACTATCATTTCTCCTTGCAATGTTAACTTGTATGGTAAGTTGGCTACCAGTGCCTCTGATCATCAGGATACAGATATTTGGAACACTTGTATTGTGCTTCCTTTCAGATCAAAATTGTCTGGAGGAGTAAACTTGATTAATAATATTGTGAATATGTTTGCGGACCTCCACCCGTCTTTGTTACTCTTTCTTCACCGTCTCCAGTGTATCAAGATCAGAAACTTGATTGATAATTCACTTATTGTTATGAGAAAAGAAATTGTTGGAAATGGCATCATTAGAGTTTCTCATGGGGAAGAAAAAATGACATGGCTTGTAGTGTCACAAAAGTTGAAGGCTGATGTTATCCGTCATGATGTCCAGTCTACTGAGATCTCAATTGCATTTACACTCCATGAAGAAGAGAATGGGGTTATCAGTCCATTTCTGGACCAACAACCAGTTTTTGCATATCTTCCTCTAAGAATGTATGGCTTGAAATTTATAATTCAAGGTGATTTTGTTCTACCTTCCTCCCGAGAGGAGGTGGATGGAGATAGTCCCTGGAACCAGTGGTTATTGTCAGAGTTTCCTGGTTTGTTTGTGAGTGCAGTGGAATCTTTCTGTTCTCTTCCATGCTTTGAGAGCTGTCCAGGGAAGGCTATTTCAGCTTATATGAGCTATATTCCACTCATTGGAGAAGTTCATGGCTTCTTTTCTAGTCTTCCTCGATTGATTATTTCTAAGTTACGCATGTCCAACTGCTTTCTTTTGGAAGGAAAAGAAAGTGAATGGGCTCCCCCATGCAAGGTTTTGAGAGGTTGGAATGAACAAGCTCTTACTCTTCTTCCTGATAATTTGCTTCGTGAATATCTTGGGCTTGGATTCTTACGTAAAGATATAATCTTGTCTGACTCACTAGCAAGAGCATTGGGTATTGAAGAGTATGGGCCTAAAATTCTTGTGCAGTTTATGTCCTCTCTGTGTCAGAAGTATAATAGCCTCAAATCAATGGGACTGGTTTGGTTGGGTTCTTGTCTAAATGTACTTCACAACATGCTTCTTCAGTCTTCTGGGCAAACGACATTAGAGTTGGAAAGGAATGCTGATCTTATAAGATCTCTTCAGAAGGTTCCACTAATTCCTCTCTCTGATGGTACCTATAGCTCCGTAGCTGAAGGTACAATATGGTTACATTCTGATTCCTCAAATGCCACAGTTGATGGAAAGTATGGACTCGAAGCTTTCCCATATTTGAATGCCAAGATTCGTGTAGTTTGCCCAGCCTTCCTTTCTCTTTTTTCTGTTGATAACTCACAAATCGATGTGCCTTCAGTTGGGAATATTAGCTGGATGCTTTATAGGATAGGCGTTCAACGTTTATCTGCCCATGAAATTATTAAAGAACACATCATTCCAGCTATAACAAATGAATCAAATCTAAATGGGGATAAAATTTTAATGACAGAGTATGTTTGTTTTGTAATGACTCACCTACTATCCATTTGCCCTGAATGCCACATAGATAGGGGTTTTATCATTTCAGAGTTACGTACGAAGGCCTTGATTTTAACAAATCATGGTTACAAAAGACTTGTTGAGGTACCAGTTCATTTCAGTAAAGAATACGGAAATCACATTGATTTGAACAAGCTCCTTAGTGTGGAAATGAATTGGCATGAGGTTGATGACACCTATTTGAAGCACCCAGTTACCAATTCACTCTCCTGTGGACTCACAAAATGGAGAAATTTTTTCCAAGAAATAGGCATCAATGATTTTGTTCATGTAGTTGAAGTTAACAGGAGCATTGCCAACATGCCTCATGATATTATGGTGAATAGAAAGTGGGACTCAGAAATAATATTTTCTGGTGCAATGGTAAAAGATTGGGAATCACCAGAGTTAACTCATTTATTAACCATGTTGGCCACGCGTGGAAACAAAGAGAGCTGTAAATACCTTTTGGAGGTTCTTGATACTTTATGGAACGATCATTTGAGTGACAAAGTTGTGGGTTGCTGTATTTCTAAATCTGGTGATTCTAGCAAACAATTTCAGTCTGCTTTTATGAATAGCATTTGTGATGCCCAATGGGTGGTATCAAGTGTGGACAAGAAGCGTCACTATCCTAAAGATTTGTACTATGACTGTGATGCAGTGCGGTCAGTTCTAGGAGCCTCTGCTCCTTATGCTCTTCCAAAGGTTCAAAGTACAAAGTTGGTACGTGATATTGGGTTCAAGACTAGAGTTTCTCTTGATGACACTTTCAATATTCTTAAAGTGTGGAGAACCGAGAAACCTTTCAAAACAAGCATATCACAAATGTGCACGTTCTATACATTTTTGTGGAATGAGATGGCTTCCTCAAAACAGAAAATCTGGGAGGAATTACACTCAGGGCCTTTCATATTTGTCCCTATTGTACCAAACTCTAGGCATGAGGATGTGGTGTCTGGTATATTTTTGTCTCCCAAGGAAGTGTATTGGCACGATCCCATTGTCTCTATTGACGAGATTAAGGATATGCATCTTCAATGCAGCTTGACAAAAATGGTTGATAGTCCCGTAATCAAGACTCTATGCAATATTTATCCAGGGCTTAAGAAATTTTTTATTAGTGAATGTGGAATACATGAATACCCTCCTCTACGCAGTTATCTTCAGTTTTTGAAACAGTTATCAGCTGTTGCTTTGCCTTCACAAGCTAATGATATAGTATTTGAAGTCTTTCTAAAATGGGCCAATGGACTAGAATCAGGACTCCTGGGTTCTGAAGATATGGCTTACCTGAAGGAATGTATAGGAAGCCCCGAGTTCAAGGTCCTTCCCACTGAACAAGATAAATGGGTTTCGCTTCATCCTTCCACTGGCATTGTGTGCTGTTGTGATGATAAGGGATTAAGACAGCAATGTAAGAATATGGGTAAAATAGATTTTGTATACTTTGGTGAGATTGGCAATGACAAAGGAAAGGTTTTCCAGGCACATTTCTCTCACCTTTTGAAAGCTCTAGGGGTTCCTCTTCTTTCTGAGATTGTAACTCGTGAAGCGAAGTATTATGGTCTGAGGGACTCTAGCTTCAAAACTTCATTAATGAACTGGGCTCTTCCTTTCACTCAGCGCTACATGTATAGTGTGCACCCTAACAGATACGCCGAGCTCAAGCAATCTGAATTTGACATCGTGAGTCGTCTACAAGTAATTGTTGTTGAAAAGCTGTTTTTCAGGAATGTTATAAAGAATTTCGGTTACGCCTCTGATGAACAGGTTCCATGTAGCTGTCTTCTGCAGGACAACATCTTATACACAACTCAAGACGAGGTCTCTCATTCCTTGTTTATGGAGTTTTCTCGTTTACTATTCAATGGAACTCCTGAGCTTCATTTGGCCAACTTCCTTCACATGATCACCACCATGGCCAAATTCGGTTCTACCGAAGAGCAAACAGAAATTTTTATCCAGAATACTCAGAAGGTGATGAAACTTCCCGAGGAGGAACCAATTTGGTCTCTTTCATCTCTCACCTCAGTCGTTGAGACTCAGAACTTACTTCAAACATGTCTTGATACTACCTTACCAGACGAACAAGGTTCGTCTTCCAAGGCTAGAAAGAAAGATCGACATTGGCCGCCTTTTGACTGGAAGACGGCTCCGGGTTTTAGTTATGCTCGCGAGAATGGTTTCAAAACACAACCAGCGAGCTCACTGCCTAACTGCAAACCATATGTTGAAGGCATCAACAATCAAATGGAGAACTTGGCTTCGATTTCAACAGACACAAACTTGACCCATGAGGTTGATTTATCCTCCACGTCGGTCACATCAGTTGACAACATTGGAGAACTTATCAGCGTAGGTGATGTAGATCTTGAGGTAATTGGTTCTGAAATTGATATACGTGGCCGTTTTAGGAAAAATCAGCTTAGAACTGGCACCCCCGATCCAGCACAGGCAATGATGACTGGGAGACTTGGCGAGCATGCGGCCTTCAAATACTTCACTGAAAATTTCAGTGATGCAGTAGTTAAGTGGGTTAACAAAGATGCAGAATCCGGATTCCCCTTCGACATAATTATAGAAGAAGATGAGGATAAGAAACAGTTCATTGAAGTGAAATCAACCAGATCTATAAAGAAAGATTGGTTTGACATCTCAGTGAAAGAATGGAAATTTGCAGTAAAAAAGGGTGAATCATTCAGTATCGCACATGTGTTATTATTACCTAATAACATCGCCCGGGTTTCAGTTTTTAAGAACCCAGTTAAAGCATGCTATTCACACAAGCTCCAACTCGCTCTTTTAATGCCGAAACTGCCAAAGGAATTCTCCATTGGCTCCTCCTGA 6549 40.19 VSSIKNGMWDSIYDSLQIINLPELTNTNVEKQPVYDCIDVGPSAEGALIKHVPKSTHDITVEDILNKVGQHIKFEQEIRSDGRLLLENKIHILKQLCSCEFWLVEQYSAKDFKSLGHGDFFSFLQKHASMLPDELHKFLVPEISERSPLEACMLQRQLVTLVSQACNNLSENEIISKQMIYNLLTQQFPLIGFKLTENGPLEDFMELVGQQKNSVVSKCVTFSVSLLGGSHLRDSLATMDNDSLGATSFSAEAGQELGAIKSVTSEDAIKVLVRAPMLLDLNLWSHWDLLFAPALGPLVPWLQKEVNIENFMCMVTKEGKVIRIDHTATADSFLEAALQGSPFHTAVKLLSIFALLGGEKYVLLSLLKHHASRAFEVIIKNSVENIEMFENWGQGLEKVAFHQNFTEQVAAGNLSLELKKKIDMRNKAISLLSRFFVDCLGYIPVEFRYLAANILLSGITSVVKDAASAILHECWKPEQRLMLHEIGLSLGVPEWIQDYDTVSSSASDLFTDACLNDRSEIKRNVHRDGLLTKYSTSEQNASFSIEENVCNEKLSVSSANCTTKTFHDANGLSCMSLASEPDGNKDAAEIIQCIRRDEFGLDLDLPISETGMLRKQHARLGRALHCLSQELYSQDSHFLLELVQNADDNIYPQSVEPTLAFIFEESGIVVLNNEEGFSAKNIRALCDVGNSTKKGSNAGYIGKKGIGFKSVFRITDAPEIHSNGFHVKFDIREGQIGFVLPTIISPCNVNLYGKLATSASDHQDTDIWNTCIVLPFRSKLSGGVNLINNIVNMFADLHPSLLLFLHRLQCIKIRNLIDNSLIVMRKEIVGNGIIRVSHGEEKMTWLVVSQKLKADVIRHDVQSTEISIAFTLHEEENGVISPFLDQQPVFAYLPLRMYGLKFIIQGDFVLPSSREEVDGDSPWNQWLLSEFPGLFVSAVESFCSLPCFESCPGKAISAYMSYIPLIGEVHGFFSSLPRLIISKLRMSNCFLLEGKESEWAPPCKVLRGWNEQALTLLPDNLLREYLGLGFLRKDIILSDSLARALGIEEYGPKILVQFMSSLCQKYNSLKSMGLVWLGSCLNVLHNMLLQSSGQTTLELERNADLIRSLQKVPLIPLSDGTYSSVAEGTIWLHSDSSNATVDGKYGLEAFPYLNAKIRVVCPAFLSLFSVDNSQIDVPSVGNISWMLYRIGVQRLSAHEIIKEHIIPAITNESNLNGDKILMTEYVCFVMTHLLSICPECHIDRGFIISELRTKALILTNHGYKRLVEVPVHFSKEYGNHIDLNKLLSVEMNWHEVDDTYLKHPVTNSLSCGLTKWRNFFQEIGINDFVHVVEVNRSIANMPHDIMVNRKWDSEIIFSGAMVKDWESPELTHLLTMLATRGNKESCKYLLEVLDTLWNDHLSDKVVGCCISKSGDSSKQFQSAFMNSICDAQWVVSSVDKKRHYPKDLYYDCDAVRSVLGASAPYALPKVQSTKLVRDIGFKTRVSLDDTFNILKVWRTEKPFKTSISQMCTFYTFLWNEMASSKQKIWEELHSGPFIFVPIVPNSRHEDVVSGIFLSPKEVYWHDPIVSIDEIKDMHLQCSLTKMVDSPVIKTLCNIYPGLKKFFISECGIHEYPPLRSYLQFLKQLSAVALPSQANDIVFEVFLKWANGLESGLLGSEDMAYLKECIGSPEFKVLPTEQDKWVSLHPSTGIVCCCDDKGLRQQCKNMGKIDFVYFGEIGNDKGKVFQAHFSHLLKALGVPLLSEIVTREAKYYGLRDSSFKTSLMNWALPFTQRYMYSVHPNRYAELKQSEFDIVSRLQVIVVEKLFFRNVIKNFGYASDEQVPCSCLLQDNILYTTQDEVSHSLFMEFSRLLFNGTPELHLANFLHMITTMAKFGSTEEQTEIFIQNTQKVMKLPEEEPIWSLSSLTSVVETQNLLQTCLDTTLPDEQGSSSKARKKDRHWPPFDWKTAPGFSYARENGFKTQPASSLPNCKPYVEGINNQMENLASISTDTNLTHEVDLSSTSVTSVDNIGELISVGDVDLEVIGSEIDIRGRFRKNQLRTGTPDPAQAMMTGRLGEHAAFKYFTENFSDAVVKWVNKDAESGFPFDIIIEEDEDKKQFIEVKSTRSIKKDWFDISVKEWKFAVKKGESFSIAHVLLLPNNIARVSVFKNPVKACYSHKLQLALLMPKLPKEFSIGSS* 2183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2382125 2397684 - Chy6G108860.1 Chy06g00358 228067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00358 2182 Gene3D - 612 781 IPR036890 -
Chy06g00358 2182 Pfam Protein NO VEIN, C-terminal 2060 2142 IPR024975 -
Chy06g00358 2182 PANTHER WU:FJ29H11 2 384 - -
Chy06g00358 2182 PANTHER WU:FJ29H11 431 2174 - -
Chy06g00358 2182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 619 729 IPR036890 -
Chy06g00358 2182 PANTHER RIBONUCLEASE H-LIKE DOMAIN, REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED 2 384 - -
Chy06g00358 2182 PANTHER RIBONUCLEASE H-LIKE DOMAIN, REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED 431 2174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00358 - - - csv:101204025 4229.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02689 Chy-Chr2:29789171 Chy06g00358 Chy-Chr6:2382125 3.42E-43 dispersed
Chy06g00358 Chy-Chr6:2382125 Chy06g00359 Chy-Chr6:2399058 8.36E-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g994 . . . . . . . . . . . Cma14g01899 Car06g01063 Car14g01700 Sed02g1510 Cpe08g00402 Cpe03g01599 Bhi01g00222 Tan10g0511 Cmetu06g0585 . Hepe05g1766 . Lcy11g1779 . . . . . . . . . . . Lsi05g01848 . . Cme06g00377 . . Bda11g00344 . . Bpe13g00862 . Bma06g01278 . Cmo06g01248 Cmo14g01952 . . . . . . . . . . . . . Cla05g00343 Cam05g0374 Cec05g0378 Cco05g0379 Clacu05g0368 Cmu05g0353 Cre05g0417 . Csa03g01089 Chy06g00358 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004540 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 4 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00358 Chy_Chr06 FPKM 16.875767 17.345495 17.21172 16.621273 21.486414 19.528242 23.437038 12.793015 12.209527 13.361707