Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00365 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCGCCATTCCGGCGCTGCCGATAGACGGCGGCGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGTGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCAGACAAAGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTACCACTTAAAATCACACCTCCAGAAATATCGGCTTGGGAAGCAATCGTTCAAGGAATCAACAGAGAACTCTAAGGATGCTTCTTGCATTGCAGAGAGTCAAGAAACAAGTTCCTCGTCGTCGCCGTCGTCGAGAATAATGGCACAGGATCTGAATGATGGTTTCCAGGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGACATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAACGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCATCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCAAAAGAGATGGCACCATTGGAGACTCAGAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTAACATCAGCTGGTAGCCCGGTTTCCCCAATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCAGTCTTCAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCCCGGCATGACGTCGAATGGATGATGAGTAATATTGGATGA 948 50.74 MLSGFSQEPAGMYSAIPALPIDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2434197 2437593 - Chy6G108930.1 Chy06g00365 228074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00365 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 312 IPR044848 GO:0003700
Chy06g00365 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Chy06g00365 315 MobiDBLite consensus disorder prediction 113 138 - -
Chy06g00365 315 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Chy06g00365 315 Coils Coil 205 225 - -
Chy06g00365 315 Pfam MYB-CC type transfactor, LHEQLE motif 148 193 IPR025756 -
Chy06g00365 315 PANTHER PROTEIN PHR1-LIKE 2 12 312 - -
Chy06g00365 315 Gene3D - 49 108 - -
Chy06g00365 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Chy06g00365 315 MobiDBLite consensus disorder prediction 114 138 - -
Chy06g00365 315 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00365 - - - csv:101213244 560.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00490 Chy-Chr2:3000544 Chy06g00365 Chy-Chr6:2434197 1.84E-67 dispersed
Chy04g00796 Chy-Chr4:10249813 Chy06g00365 Chy-Chr6:2434197 7.84E-54 dispersed
Chy04g01368 Chy-Chr4:20330154 Chy06g00365 Chy-Chr6:2434197 1.27E-60 dispersed
Chy04g01721 Chy-Chr4:23582162 Chy06g00365 Chy-Chr6:2434197 5.96E-08 dispersed
Chy06g00365 Chy-Chr6:2434197 Chy11g01047 Chy-Chr11:14949199 4.30E-70 dispersed
Chy06g00365 Chy-Chr6:2434197 Chy01g00844 Chy-Chr1:7393449 7.26E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy06g01030 . 10 282 G2-like Transcription Factor Family AT5G16560 51.8 7.3e-48 188.3
Chy04g00122 . 191 396 G2-like Transcription Factor Family AT5G16560 51.7 9.5e-40 161.4
Chy04g00565 CCT 1 160 G2-like Transcription Factor Family AT5G42630 60.0 2.5e-37 152.5
Chy10g01118 . 19 258 G2-like Transcription Factor Family AT1G25550 52.7 2.0e-49 193.0
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT5G05090 56.5 3.0e-74 275.4
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT5G05090 55.4 1.1e-71 266.9
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT4G13640 57.2 5.7e-66 248.1
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy04g01368 . 33 265 G2-like Transcription Factor Family AT1G69580 50.4 6.1e-40 161.8
Chy01g00844 . 5 373 G2-like Transcription Factor Family AT1G79430 53.9 3.6e-83 305.4
Chy11g01047 . 1 365 G2-like Transcription Factor Family AT1G79430 51.4 1.3e-75 280.4
Chy06g00365 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 6.9e-42 168.3
Chy04g01368 . 72 266 G2-like Transcription Factor Family AT5G18240 52.5 4.9e-39 158.7
Chy02g00491 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 1.4e-51 199.9
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 1.3e-90 330.1
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT3G10760 58.5 9.9e-83 303.9
Chy08g00237 . 1 203 G2-like Transcription Factor Family AT2G40970 60.7 6.0e-61 231.1
Chy04g01682 . 1 199 G2-like Transcription Factor Family AT2G40970 59.5 8.2e-58 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18086 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00365 Chy_Chr06 FPKM 0.0 1.129625 0.0 0.0 2.884979 1.852404 2.945846 0.0 0.0 0.0