Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00365 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCGCCATTCCGGCGCTGCCGATAGACGGCGGCGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGTGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCAGACAAAGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTACCACTTAAAATCACACCTCCAGAAATATCGGCTTGGGAAGCAATCGTTCAAGGAATCAACAGAGAACTCTAAGGATGCTTCTTGCATTGCAGAGAGTCAAGAAACAAGTTCCTCGTCGTCGCCGTCGTCGAGAATAATGGCACAGGATCTGAATGATGGTTTCCAGGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGACATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAACGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCATCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCAAAAGAGATGGCACCATTGGAGACTCAGAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTAACATCAGCTGGTAGCCCGGTTTCCCCAATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCAGTCTTCAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCCCGGCATGACGTCGAATGGATGATGAGTAATATTGGATGA 948 50.74 MLSGFSQEPAGMYSAIPALPIDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2434197 2437593 - Chy6G108930.1 Chy06g00365 228074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00365 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 312 IPR044848 GO:0003700
Chy06g00365 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Chy06g00365 315 MobiDBLite consensus disorder prediction 113 138 - -
Chy06g00365 315 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Chy06g00365 315 Coils Coil 205 225 - -
Chy06g00365 315 Pfam MYB-CC type transfactor, LHEQLE motif 148 193 IPR025756 -
Chy06g00365 315 PANTHER PROTEIN PHR1-LIKE 2 12 312 - -
Chy06g00365 315 Gene3D - 49 108 - -
Chy06g00365 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Chy06g00365 315 MobiDBLite consensus disorder prediction 114 138 - -
Chy06g00365 315 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00490 Chy-Chr2:3000544 Chy06g00365 Chy-Chr6:2434197 1.84E-67 dispersed
Chy04g00796 Chy-Chr4:10249813 Chy06g00365 Chy-Chr6:2434197 7.84E-54 dispersed
Chy04g01368 Chy-Chr4:20330154 Chy06g00365 Chy-Chr6:2434197 1.27E-60 dispersed
Chy04g01721 Chy-Chr4:23582162 Chy06g00365 Chy-Chr6:2434197 5.96E-08 dispersed
Chy06g00365 Chy-Chr6:2434197 Chy11g01047 Chy-Chr11:14949199 4.30E-70 dispersed
Chy06g00365 Chy-Chr6:2434197 Chy01g00844 Chy-Chr1:7393449 7.26E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18086 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00365 - - csv:101213244 560.066