Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00369 ATGTCGTCAGCATTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTTGTTTTCTCCTGTATGGGAGCTGCTTACGGCACGGCGAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCCAAGGCTAAATCTTATTACCTTTTCGATGGTTACGCTCATCTCTCCTCTGGGCTTGCTTGTGGTCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGAATCGTCGGGGATGCGGGCGTCAGGATCTATGTCAGCATGTTTAAGTAG 390 50.77 MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRIYVSMFK* 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2473337 2473955 + Chy6G108970.1 Chy06g00369 228078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00369 129 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Chy06g00369 129 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Chy06g00369 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy06g00369 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 129 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy06g00369 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy06g00369 129 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy06g00369 129 Gene3D - 11 127 IPR035921 -
Chy06g00369 129 SUPERFAMILY F1F0 ATP synthase subunit C 87 123 IPR035921 -
Chy06g00369 129 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Chy06g00369 129 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 123 - -
Chy06g00369 129 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01403 Chy-Chr3:16792499 Chy06g00369 Chy-Chr6:2473337 2.21E-78 dispersed
Chy03g01404 Chy-Chr3:16796299 Chy06g00369 Chy-Chr6:2473337 3.54E-81 dispersed
Chy04g00346 Chy-Chr4:3091120 Chy06g00369 Chy-Chr6:2473337 6.49E-09 dispersed
Chy06g00369 Chy-Chr6:2473337 Chy03g01156 Chy-Chr3:14787207 8.67E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00369 K02155 - csv:101213721 216.853