Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00371 ATGGCTCCAAGTTTCTCCAGCCACCAAGATCTGTACAATAACCAAGACCAATTCATGAGGTCTCGCCCTAATTTCGAAACCTCCGCCGACAACTCCACCGGAATCCTCACCTACTTTCCGCCCAACCCAATTACCTCTCCGGACAAGCTCAGCTTTGGCGAGGTTATGCAGTTCGCCGACTTCGGTCCCAAGCTCAGTCTCAACCGCTTCGACGACGACGATAGCGAACCCCCCGGCATCGACCCGGTCTACTTCCTAAAATTCCCAGTTTTAAATAACGAGAGGGTGGAGGACACGGCGGGGGGCGGAGAGACGGAGGAAGCGGCGGAGATAGGAGGGAGATCGTTAGTTGTTGGGGAATTAGAAGAGGAGAATTTTAGGAGTAATAACAATACCAACAACAATAATAATAGTAATAATGGGAACAATGGGAATAATAATAATAATAACAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGGATGACACATATTGCGGTGGAGAGAAACCGAAGGAAGCAGATGAATGAGCATCTTCGTGTTCTGCGATCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGTGGAGCAATCGAGTTCGTGAGAGAGTTAGAGCAACTCCTACAATGTTTGGAATCCCAAAAACGACGTCGTCTTTTAGGAGAACCACCAATAGTACAAGCTGCTGACACACCACCGCCACAACAACCTCCATTTCTACCACCAGGAGCAGGTAATTTTCCAGGTCATCAAAACGAGGGACAAATATTTGAAACGATAGCTGAAAGCAAATCGTGCCTCGCTGACGTGGAAGTGAAGGTAGTAGGGTTTGATGCTATGATAAAAATCCTATCGAGAAGACGACCGGGACAACTCATCAAAGCCATCGCAGCACTTGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAAACTGTTCTTTATTCTTTCAACGTCAAGATAGCTAGCGAATCGAGATTTACGGCTGAAGATATAGCGAGTTCAGTTCAACAAATATTCAATTTTATTCATGCAAACACGGGCATGTGA 1104 45.56 MAPSFSSHQDLYNNQDQFMRSRPNFETSADNSTGILTYFPPNPITSPDKLSFGEVMQFADFGPKLSLNRFDDDDSEPPGIDPVYFLKFPVLNNERVEDTAGGGETEEAAEIGGRSLVVGELEEENFRSNNNTNNNNNSNNGNNGNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPIVQAADTPPPQQPPFLPPGAGNFPGHQNEGQIFETIAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFNFIHANTGM* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2484401 2486975 - Chy6G108990.1 Chy06g00371 228080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00371 367 CDD bHLH_AtFAMA_like 169 237 - -
Chy06g00371 367 PANTHER TRANSCRIPTION FACTOR FAMA 23 366 - -
Chy06g00371 367 CDD ACT_UUR-ACR-like 293 357 - -
Chy06g00371 367 SMART finulus 172 223 IPR011598 GO:0046983
Chy06g00371 367 PANTHER TRANSCRIPTION FACTOR FAMA 23 366 IPR044283 GO:0003700|GO:0010052
Chy06g00371 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 234 IPR036638 GO:0046983
Chy06g00371 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 217 IPR011598 GO:0046983
Chy06g00371 367 MobiDBLite consensus disorder prediction 126 151 - -
Chy06g00371 367 Pfam Helix-loop-helix DNA-binding domain 167 218 IPR011598 GO:0046983
Chy06g00371 367 ProSiteProfiles ACT domain profile. 293 367 IPR002912 -
Chy06g00371 367 MobiDBLite consensus disorder prediction 126 169 - -
Chy06g00371 367 MobiDBLite consensus disorder prediction 155 169 - -
Chy06g00371 367 Gene3D - 156 232 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01131 Chy-Chr5:15809475 Chy06g00371 Chy-Chr6:2484401 4.37E-52 dispersed
Chy06g00006 Chy-Chr6:34274 Chy06g00371 Chy-Chr6:2484401 2.85E-56 dispersed
Chy06g00371 Chy-Chr6:2484401 Chy06g00612 Chy-Chr6:4162501 1.11E-31 dispersed
Chy06g00371 Chy-Chr6:2484401 Chy06g02143 Chy-Chr6:25749137 1.19E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18087 PF00010 HLH 7.50E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00371 - - csv:101214530 638.647