Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00389 ATGGCCTCACCATCGTCTTCTTCGTCGTACTTGAATTCAACCTGTGCGCTTCTCGCTGTTCTGGATTTCGACGAGAAACACAACGAGAGCATGAAGGAGATGGAGACGGAATGGATTGTGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAGTGGCGGACAGTTTGGTCAGACAGAGACTGGTTCTTCTTTATCCAATCGTTTGAGAAACCCTGATTTCATGATGGAAAAGGGAACAAATGGCATGAAGGGAGTGGGGGTGCTTGCCAGTGAAAATGGACATGATTCGAGACTAGATAGGAATTCCAAAAACATTCCTTGTGAGGATTTTAAGGGTAGTAGAAACACCATTATTCTTTCACCGGGAGAGAATCCTCATGCATTGCAAAATAATCTTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATTTCAGGGGCCAAAACGTTTTATCTGCCCTCGCCGTGTGGATAAAGGGATAAATATATCTGTTGACTCTCCTTCCAAACCCCCTCCTTGTCAAGAAAATACTGCAGTTCCACAAATGAGAGAACATGATCTCAAGTATAAACCTCAAACAGTTGATCGTCATGTGGCCAAGGATTTTAAGATTGAGAACACATCAAATGAACAGTCTGCAAGTTACATGCCAATTGCTTCAAAGAAACCCAACGTGAACATTAAAGGGAAGGAGAAGGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCCATGATTAATAGAAATGGAATTGAAAAATCCAATAACACCAACAATCGACATGAGAAGCAAGGTTTAGGTCCTCGTCAGTTTGTTAGTTCACCTAGAGCTACTGGACATAAAAGATTGGTACGGAATGGTTGTATCTCACCTCATAATATTGCAATAAGAGCAAAAAGTTTATCTGAGCAGTGTGAAAAGAGTTCTAGAGAAGTTGACAAGAGCAATTTGGGGAACATGCCATCAAGCAGTCCATCTTGTCCAATAGATATAAATGATATAGTTGCTGAAGACAATTTTAGTAACAAAGATAAAGGAAAAGGGATTATGCGTCAACCTTCTCTATCACATGATAAGGATGATGTCAGAGTTATTTTTTCATCTAGCAGTGACACAGGAAAGGATGTTGGAGCAAATCCAGGGAGAACTTCCAGATTAGGTACATCTGAACATTGTGAAAAAGTAGGTGTTTGGAGAAGAACACATAATCATTTGAAGAACGGGATTGTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAGATAGATAGTGTTGGAAGGCTGTCTAATGGAAAAACTGAGATTGCTAAGGAGAGAAAAATTCCTAGCAGGCAAGAACTCATAGCAGAAGCTGATTGTGGAGGAAGTGCTGATACGTCTCAAAGGGCTTCTCCCAAATTAGATCAGACTAATGGACCAATTCATGCGGAAAGCAAATTAAACAAAAAACAAAAGAAACATGAATCAACTTATCAAATTAATTCTTCACGCCGCATTCCAGATGTCGTGTGCCTTGGTACATCCGGGGAGTCTTCAAATTCAAGGTCAACTAGACTGAAGAGTAAAATAGTTTGTGATAATTTGAATGAAGTTATTGAGGTTGATGAGTTGTCGCCTGAAATGAGACACCCTGTCTCCCAGACTGGTGGTAGCTTAAATGATGACACCTCAGATGTTAGGGCAAGACAACTTGAAGCTGACGAGATTTTGGCTCGTGAACTTCAGGAACAACTATATCAGGAGATGCCTATTGGAGGAGAAGAGATTGATGAACATTTAGCCATGGCACTGCAGCAGGTGGAACATGGCCTTCTTGCACCCTCCCGCCGGAGTAATAATAGTCAGAGGGGCTCGCTGGTAGCACAGGCCAATCGACGCACTCGTTCTCAATCTTTACAAAACCCATCCAATAGAACGCGAACTCGAGTAACTCACTCTGCACGAATGGCACAGATAAGGAATCAGTTTTTTGGTGGCTCTCATAGAGTGTCCACTAGACAAAGGAATCTTAATTTTCCTATGCATATGGATTTAGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCAGTTGGAGATATGGATGATGTCAGAATGAATAGGGACATCTTGCATATCCAGCGTGATTTCAACGAGAATGATTATGAAATGCTGCTATCCCTTGACGAGAACAATCACCGTCATGCTGGTGCACCTACTAACCGGATTAATAGTTTGCCACAATCTACTGTACAGACTGACAGCACACAAGAAGCTTGTGCAATTTGTCTGGATACGCCAACCATTGGAGATGTCATTCGCCATCTACCTTGTTTACACAAATTTCACAAAGATTGTATTGATCCATGGCTACAGAGACGAACATCGTGCCCGAACTGGCAAACAGCCATCGCTCTTTTACATCCTAAAATTCAAAAAACTTTCGTGAAAATAATCCGAATCCCTTCGAAGAACACGAAAATGAGTCGAAAAATCCGCGTAATCTGCAACGACCCAGACGGAACCGATTCATCATCAAGCGAAAACGAAAGAGATGAATCAAATTCTTCAAAATCCAAACGAATAGTACGAGAAATTCACTTCCCCCTTTTCCCTTCTTCTAACTCTTCATCTGATTCTTCAATTCATGATGAGGAAACCTCTCACACCTCTTCTCACCACACCAACAATGGCGGAAAACCCCAACAGCTAACAAACATTAGGGTTTTGACCAAAACCCTAACGCCCGAAAGAACAACCTCCCGATACAGAGGCGTGAGGCAGAGGAAATGGGGGAGATGGGCTGCTGAAATTCGAGACCCCTTTAAGAGAGCTCGAGTTTGGCTTGGTACTTATAATACTGCTGAGGAAGCTTCTAGGGCTTACGAATCGAAGCGGCTTGAGTTTCAATCTGCCATGGCCGCTGCTCCTAAAGCTCCGACGAGGTTCAAAGGTTCTCATCTACTGGGTTATTGA 2970 42.09 MASPSSSSSYLNSTCALLAVLDFDEKHNESMKEMETEWIVDVPDTPDRLAARQISGGQFGQTETGSSLSNRLRNPDFMMEKGTNGMKGVGVLASENGHDSRLDRNSKNIPCEDFKGSRNTIILSPGENPHALQNNLLLRKGGREKYSFQGPKRFICPRRVDKGINISVDSPSKPPPCQENTAVPQMREHDLKYKPQTVDRHVAKDFKIENTSNEQSASYMPIASKKPNVNIKGKEKVVEESFQDVGLSMINRNGIEKSNNTNNRHEKQGLGPRQFVSSPRATGHKRLVRNGCISPHNIAIRAKSLSEQCEKSSREVDKSNLGNMPSSSPSCPIDINDIVAEDNFSNKDKGKGIMRQPSLSHDKDDVRVIFSSSSDTGKDVGANPGRTSRLGTSEHCEKVGVWRRTHNHLKNGIVLSNPSGNSFKKIDSVGRLSNGKTEIAKERKIPSRQELIAEADCGGSADTSQRASPKLDQTNGPIHAESKLNKKQKKHESTYQINSSRRIPDVVCLGTSGESSNSRSTRLKSKIVCDNLNEVIEVDELSPEMRHPVSQTGGSLNDDTSDVRARQLEADEILARELQEQLYQEMPIGGEEIDEHLAMALQQVEHGLLAPSRRSNNSQRGSLVAQANRRTRSQSLQNPSNRTRTRVTHSARMAQIRNQFFGGSHRVSTRQRNLNFPMHMDLDMRLDILEALEAAVGDMDDVRMNRDILHIQRDFNENDYEMLLSLDENNHRHAGAPTNRINSLPQSTVQTDSTQEACAICLDTPTIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPNWQTAIALLHPKIQKTFVKIIRIPSKNTKMSRKIRVICNDPDGTDSSSSENERDESNSSKSKRIVREIHFPLFPSSNSSSDSSIHDEETSHTSSHHTNNGGKPQQLTNIRVLTKTLTPERTTSRYRGVRQRKWGRWAAEIRDPFKRARVWLGTYNTAEEASRAYESKRLEFQSAMAAAPKAPTRFKGSHLLGY* 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2621835 2631486 + Chy6G109170.1 Chy06g00389 228098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00389 989 SMART ring_2 758 798 IPR001841 -
Chy06g00389 989 MobiDBLite consensus disorder prediction 456 498 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 482 496 - -
Chy06g00389 989 SMART rav1_2 920 974 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 ProSiteProfiles Zinc finger RING-type profile. 758 796 IPR001841 -
Chy06g00389 989 MobiDBLite consensus disorder prediction 253 268 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 610 646 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 842 863 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 310 332 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 828 903 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 318 332 - -
Chy06g00389 989 Pfam AP2 domain 919 965 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 MobiDBLite consensus disorder prediction 55 73 - -
Chy06g00389 989 PRINTS Ethylene responsive element binding protein signature 943 959 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 PRINTS Ethylene responsive element binding protein signature 921 932 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 SUPERFAMILY RING/U-box 753 797 - -
Chy06g00389 989 CDD RING-H2_PA-TM-RING 758 796 - -
Chy06g00389 989 CDD AP2 919 973 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 MobiDBLite consensus disorder prediction 372 390 - -
Chy06g00389 989 Pfam Ring finger domain 757 797 IPR001841 -
Chy06g00389 989 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119-LIKE 823 976 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 253 278 - -
Chy06g00389 989 Gene3D AP2/ERF domain 919 982 IPR036955 GO:0003700|GO:0006355
Chy06g00389 989 SUPERFAMILY DNA-binding domain 919 971 IPR016177 GO:0003677
Chy06g00389 989 ProSiteProfiles AP2/ERF domain profile. 920 982 IPR001471 GO:0003700|GO:0006355
Chy06g00389 989 PANTHER DNA-BINDING DOMAIN 823 976 IPR044808 GO:0003700|GO:0009873
Chy06g00389 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 803 IPR013083 -
Chy06g00389 989 MobiDBLite consensus disorder prediction 372 391 - -
Chy06g00389 989 MobiDBLite consensus disorder prediction 54 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00389 - - - csv:101205482 1565.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00134 Chy-Chr3:1251727 Chy06g00389 Chy-Chr6:2621835 8.79E-15 dispersed
Chy06g00389 Chy-Chr6:2621835 Chy10g01143 Chy-Chr10:16363925 1.27E-38 dispersed
Chy06g00389 Chy-Chr6:2621835 Chy03g00348 Chy-Chr3:4494323 7.86E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g854 . . . . . . . . . . Cma06g01262 . Car06g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01271 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00389 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18089 PF00847 AP2 9.30E-12 CL0081 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00389 Chy_Chr06 FPKM 38.32906 45.292168 49.578243 54.835114 29.189049 25.268597 34.475594 30.500366 34.349503 39.654495