Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00391 ATGGCTAGGGAAGTACATGGCGTTTTAAGCCAACAATTATACATGGAAAGACCAAGGGTTGTCTCCGATGTACGGATTACTGCAGATCATAGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCACAGTTTATGCGAGATCGTGTTGCGTTAAGAAGATTTTCTGACATGAGTGATGGAGATCAACAACAACAGCAGCAAAAGAGACCAGGTTTTGGGTTCAATCCGAGCAACCAATTGGTGTATGAGGATCTTAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGTAGTTCAGAAATGTCATCAACGCCAATGAATGCTTATGCAGCTGAAAAGGACACCAAGGTTTATCCTAATACCACAAGCAAATGTCAGTGGGAATATAACAATGGTACTGGACAAGCATCTGCTGCATATGCCGACGAAACTAACCGAGGAGTTCAAATTGGCCCCATGATGTCGGCCTTGTATCCATTGGATTCGCCTCGTTCATGTTATCCTTGTGGGGCTGGATTTGGAGATTTCTCTGCCAATGACAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCGAGGCCTAATGATGGGAAGCTTAGATATGTAGCGGGAGAAACGCGCATCATATCCATTAGGAAAAACATCTCATATGAAGAACTTACCAAAAAGACATACGCTGTCTGTAAATATGCCCACACGATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATCTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCAGGAGCTGGAAAACGCAGAAGGTTCTCAGAGACTTAGAATTTTTCTTATTTCTTCGAATGATTGTAGTGAGAGTCCTACTTCTATTGAAGGAAGGGTAGTTCCACCAATTGATGTGGATTATCAATATGTTGCGGCTGTGAACGGTATTCTAGACCCGAGTCTTCAAAGGAGCTCCAGTGGGCAGAGTTTCACAAGCCAGAATAGCCAGGTGGGAGCCATCTCAGATCATAGTCCCAATTTTCGTACTGATTCGTCACATGCTACAGACGCGAAAGATGTCAGTTCACCAATGCCAAATTTGGCGGGAATGTTACCTAGACCAGGTGGTCAATTGTTAAACCCCATCCAAGTCCCACGCAAGTCATTAAATCAATCACCTTTAATTTCTCCGGTTACTGTAATGCAAAAAGATTTTAGGAACGTGGATGCAACATATGCAGACGACGCTAGAAACTTCTCTCCAATTGTTTCAGGAAAACATCCATTTGATTCGGTTTATTATGTTGATGCAATGGGCGGTCACAATCATCTTTACCATGGTTCTCCATTGATGAATTATTATCATGAAAAATCTACTGCGGAAACTGATGAGGCATACAAAGTTCTTAATGTTCATTTCCCACGAAGCTCCAGTGAGGATTTTGTTCCTGCACCCACCTGGGGTCTACGTGATACACATCCAATGAAAACTATGCTGAAGGATCGGGCAGTTAATTATGAACAACTATGCTCTGATGCGGAGTATTTGATGCAGCTAAGATCTGGAACCACCCATATGGGACAAAGAATTATGCATTCGCATTCTGAGCCCCTACTGCTGGAGCAGGATCAAAAGCCGAATCATGGAGGGCCCTATCCACTAACCTCATTCAATGATAGTGATCAGTCACCTTCACTTGCAATGTCAAGTTCCTTGCAGGATTTGCCAACCTTGTGGAAACAGAGAGATGGCGTGGAATTTCAATATGCTAAATATGAGAATCATCGAAAGTTGGCATCTGGTAGTGATAATGAAACATATGAAGAATGCAATTTTGACGAAAAGAAGAATAATTTCAATGGAATTATTTATGCTCCATCACTTAATGATGAAGAAAAATACAGATATTTGCAACATGCTGACTACCGACAAAATGGTTGCCCCCCCAAAGAGGTTCAAAACCTTAGAGGTAGATCTTCTGCCGAACGAGGTATTGAATTAGAAAATTCTGCAGATACCACGGGTGTCCCTTCCCTCGTTTACCATTTTGAAAGAACTGCTCCAAAAAATTTCGAGGAGAGCCAATATTCTACCAAGGATCAACCAACTACTTCTGATATAGTAAGGAGCCAACCACTATCGTGCACTTCTTCCGATCTACTACCACATACAATTCAAGCTTTGGACGATGTAAAGATCATAAATCAGAAAACAACATGGGATAGTTCTGCTTCAGGTAGAGAGATTTCTCTAGGCGATGAGAACTTTGTAACCTGTCATTACTGCAAGGTTGCAGCCCATAGCAGAAGAAAGAGCAACTGTGATGATGCTATATCACACTCAGATGATTCTCATGGCAATGAGGATGAGGAGTTAGCTGTAATAGTTGAAGATGTAACTCATAGTCTGCCTCCTGACATACCCTTGGCCTCAGGAATTGTCCCGCGGGTTGAAAATGAGGCCAGCGATGAATTTCCATCTTCAAGCGGAAATGATGCTCTGAGTTCTAGTTCAGAAACTGACCATGAGGATGCCGACAGTATTCTTAGTTCAAGGGACGAGTCTATGAGTGAGGCAGCAATAGCTGAAATCGAAGCTGGCATCTATGGCCTGCAGATAATAAAGGATGCAGATCTTGAAGAATTGCTAGAGTTGGGATCTGGGACATTTGGTACCGTTTTTCATGGAAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGCAGTTTTTCAGAGCAAGAACGACTGACTAGAGATTTCTGGAGGGAAGCAAGGATTCTATCGACCCTTCACCATCCGAACGTTTTGGCATTTTATGGGGTGGTTCCTGATGGACCTGATGGAACATTGGCAACTGTAACCGAGTATATGGTAAACGGTTCGTTAAGGCATGTCCTTTTAAGGAAAGATAAAGTGCTTGATCGTCGGAAAAGGCTTATAATTGCAATGGATGCGGCTTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATCTGAAATGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCTATATGCAAGGTTGGAGATTTTGGGTTGTCAAGAATTAAACGCAATACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTACCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAACATGCATTGTGGTGCCATCATCGGTGGAATTGTAAGTAATACTCTTAGACCGCCAATTCCGAAACGCTGCGATCCCGAATGGAAAAAGCTAATGGAAGACTGTTGGTCTCCTGAACCTGCAGCAAGACCATCATTCACAGAGATAACAAATAGACTTCGCAGCATGTCGGTAGCGCTTCAGATCAGAAAGAGGCCAAATGTAGCAAGTAGATGA 3489 42.22 MAREVHGVLSQQLYMERPRVVSDVRITADHSVSDVCVQTGEVFSPQFMRDRVALRRFSDMSDGDQQQQQQKRPGFGFNPSNQLVYEDLSGILGLKRMNSESSSEMSSTPMNAYAAEKDTKVYPNTTSKCQWEYNNGTGQASAAYADETNRGVQIGPMMSALYPLDSPRSCYPCGAGFGDFSANDKMKFLCSFGGRILPRPNDGKLRYVAGETRIISIRKNISYEELTKKTYAVCKYAHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYQELENAEGSQRLRIFLISSNDCSESPTSIEGRVVPPIDVDYQYVAAVNGILDPSLQRSSSGQSFTSQNSQVGAISDHSPNFRTDSSHATDAKDVSSPMPNLAGMLPRPGGQLLNPIQVPRKSLNQSPLISPVTVMQKDFRNVDATYADDARNFSPIVSGKHPFDSVYYVDAMGGHNHLYHGSPLMNYYHEKSTAETDEAYKVLNVHFPRSSSEDFVPAPTWGLRDTHPMKTMLKDRAVNYEQLCSDAEYLMQLRSGTTHMGQRIMHSHSEPLLLEQDQKPNHGGPYPLTSFNDSDQSPSLAMSSSLQDLPTLWKQRDGVEFQYAKYENHRKLASGSDNETYEECNFDEKKNNFNGIIYAPSLNDEEKYRYLQHADYRQNGCPPKEVQNLRGRSSAERGIELENSADTTGVPSLVYHFERTAPKNFEESQYSTKDQPTTSDIVRSQPLSCTSSDLLPHTIQALDDVKIINQKTTWDSSASGREISLGDENFVTCHYCKVAAHSRRKSNCDDAISHSDDSHGNEDEELAVIVEDVTHSLPPDIPLASGIVPRVENEASDEFPSSSGNDALSSSSETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKDADLEELLELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDKVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSTSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDPEWKKLMEDCWSPEPAARPSFTEITNRLRSMSVALQIRKRPNVASR* 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2637972 2643379 - Chy6G109190.1 Chy06g00391 228100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00391 1162 Pfam PB1 domain 201 284 IPR000270 GO:0005515
Chy06g00391 1162 Gene3D Phosphorylase Kinase; domain 1 874 968 - -
Chy06g00391 1162 SUPERFAMILY CAD & PB1 domains 201 291 - -
Chy06g00391 1162 SMART PB1_new 200 287 IPR000270 GO:0005515
Chy06g00391 1162 Pfam Protein tyrosine and serine/threonine kinase 885 1144 IPR001245 GO:0004672|GO:0006468
Chy06g00391 1162 MobiDBLite consensus disorder prediction 324 361 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 839 853 - -
Chy06g00391 1162 ProSiteProfiles Protein kinase domain profile. 881 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00391 1162 MobiDBLite consensus disorder prediction 551 570 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 821 854 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 324 364 - -
Chy06g00391 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672|GO:0006468
Chy06g00391 1162 SUPERFAMILY Protein kinase-like (PK-like) 875 1143 IPR011009 -
Chy06g00391 1162 Gene3D - 204 288 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 824 838 - -
Chy06g00391 1162 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 117 1156 - -
Chy06g00391 1162 CDD PB1_UP2 189 285 - -
Chy06g00391 1162 PANTHER SERINE-THREONINE PROTEIN KINASE 117 1156 - -
Chy06g00391 1162 CDD STKc_MAP3K-like 887 1144 - -
Chy06g00391 1162 Gene3D Transferase(Phosphotransferase) domain 1 969 1160 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 60 80 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 59 80 - -
Chy06g00391 1162 ProSitePatterns Protein kinases ATP-binding region signature. 887 912 IPR017441 GO:0005524
Chy06g00391 1162 SMART serkin_6 881 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00391 1162 MobiDBLite consensus disorder prediction 693 712 - -
Chy06g00391 1162 MobiDBLite consensus disorder prediction 543 570 - -
Chy06g00391 1162 PRINTS Tyrosine kinase catalytic domain signature 1000 1018 IPR001245 GO:0004672|GO:0006468
Chy06g00391 1162 PRINTS Tyrosine kinase catalytic domain signature 1115 1137 IPR001245 GO:0004672|GO:0006468
Chy06g00391 1162 PRINTS Tyrosine kinase catalytic domain signature 1071 1093 IPR001245 GO:0004672|GO:0006468
Chy06g00391 1162 PRINTS Tyrosine kinase catalytic domain signature 963 976 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00391 - - - csv:101205945 2236.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01709 Chy-Chr3:18661874 Chy06g00391 Chy-Chr6:2637972 9.62E-31 dispersed
Chy05g00935 Chy-Chr5:14006667 Chy06g00391 Chy-Chr6:2637972 4.69E-29 dispersed
Chy06g00391 Chy-Chr6:2637972 Chy12g01122 Chy-Chr12:16191008 9.34E-38 dispersed
Chy06g01678 Chy-Chr6:19318325 Chy06g00391 Chy-Chr6:2637972 1.12E-27 dispersed
Chy06g00391 Chy-Chr6:2637972 Chy08g00913 Chy-Chr8:16570660 8.47E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71308 PF07714 PK_Tyr_Ser-Thr 4.70E-61 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00391 Chy_Chr06 FPKM 1.016765 0.443999 0.090925 0.343142 2.663782 2.358431 2.619616 1.784304 1.72242 1.597556