Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00395 ATGGCAATGGCGGAATCTGGTAGATGGATTCGTTTGATTCTTCTTGTGGTGTTCATGTTGTTCGTCGGAGCAATTGCTAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGGAACTCAGAAGTTGCAGAGCTCAAGCAACTCAACGATGGCGGTGAGGTTGGATGAGGCTAAGGATCTCGGTAATGAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCTACTGCGAGGAGGGAGCTCGGTTTCTTCTCTTGTGGAACCGGCAATCCTATTGATGACTGTTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAACGCCGTCGGTGGCCGTGACGGTCGTTTTTATGTCGTCACTGACTCCGGCAACGACAACCCTGTCAACCCAAAGCCTGGTACTTTGCGACATGCCGTCATCCAGGAAGAACCACTCTGGATTGTGTTCCAAAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGAAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCAATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGCGCTGATGGACTCGTTGATGCCGTCATGGGATCCACTGCAATTACCATCTCCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTAGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCACTTTGGTGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGTCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCAAAAGAGGTAACAAAAAGAGTTGAGACATCTGAAAGTGAGTGGAAAGGTTGGAATTGGAGATCAGAAGGAGACCTTTTGTTGAATGGAGCCTTTTTCATTCCATCTGGTGCGGGGGCCTCATCAAGTTATGCTAGAGCTTCAAGCTTGGGAGCTAAATCTTCATCCATGGTTGGTACTATAACATCCAATGCCGGTGCGCTTTCCTGCCGAAGAGGCCACGCATGCTAG 1344 46.35 MAMAESGRWIRLILLVVFMLFVGAIARVPKEIPEIENGGTQKLQSSSNSTMAVRLDEAKDLGNEHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAVGGRDGRFYVVTDSGNDNPVNPKPGTLRHAVIQEEPLWIVFQRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETSESEWKGWNWRSEGDLLLNGAFFIPSGAGASSSYARASSLGAKSSSMVGTITSNAGALSCRRGHAC* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2675533 2680018 + Chy6G109230.1 Chy06g00395 228104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00395 447 Pfam Pectate lyase 184 362 IPR002022 -
Chy06g00395 447 PANTHER PECTATE LYASE 14 444 - -
Chy06g00395 447 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Chy06g00395 447 SMART amb_all 173 370 IPR002022 -
Chy06g00395 447 Gene3D - 98 440 IPR012334 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Chy06g00395 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Chy06g00395 447 PANTHER PECTATE LYASE 18-RELATED 14 444 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy05g00262 Chy06g00395 CCT
Chy05g00262 Chy06g00395 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00395 Chy-Chr6:2675533 Chy12g01211 Chy-Chr12:16852088 0 dispersed
Chy05g00262 Chy-Chr5:2297202 Chy06g00395 Chy-Chr6:2675533 0 transposed
Chy08g00873 Chy-Chr8:16159387 Chy06g00395 Chy-Chr6:2675533 0 transposed
Chy10g01285 Chy-Chr10:17374876 Chy06g00395 Chy-Chr6:2675533 0 transposed
Chy04g00894 Chy-Chr4:12178723 Chy06g00395 Chy-Chr6:2675533 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00395 K01728 - csv:101218188 902.123