Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00405 ATGAGACAAGCATCTTTTCCCGCCTTCCTTGCAACAGCAATCATCGTAGTGCATTTTGTGGCGTTTAGGTCTGCAGCTGTCACAGCCAACGTCGGAGGACATGAGCCAGTCCTTGAATTTTATATGCACGACATTCTTGGCGGTGCCAGCCCAACGGCGAGACCGATTACTGGTCTGCTGGGGAACATATACACTGGTCAAGTACCCTTTGCAACACCTATAGGGTTTCTTCCCCCAGACGGTGGTGTAGCGATCCCAAATGCCAATGGTGCTCTCCCTACTGTGAATGGCATCAATGGTATCCCTCTAGGAACTGGCTTGTCTGGCACTGCTTTTGCTGGAAATCCCAACCCACAAAATGTCCCCCAGACCCAACTGGGACCTGATGGGTTGGGGCTAGGCTTTGGAACAATTACGGTCATCGATGACGTCTTGACCACCTCGCCAGAGTTGGGCTCGCAGTCAATTGGCCAGGCACAAGGGGTGTATGTGGCTAGTTCGGCTGATGGAACTACGCAGATGATGGCATTTACAGCTATGGTTGAAGGAGGAGAATATGGTGACAGTCTCAACTTCTATGGAGTATTCAGGATTGGTAGCCCCTCGTCGCATTTGTCAGTGATTGGAGGAACTGGCAAGTTCAAGAATGCACGTGGGATTGCAGAGGTGCGATCCCTCATTCCACCGGGCCAGCACGTGGCAGATGGAGCAGAAACATTGCTGAGGGTCCTTGTACATCTAACCTACTGA 750 51.6 MRQASFPAFLATAIIVVHFVAFRSAAVTANVGGHEPVLEFYMHDILGGASPTARPITGLLGNIYTGQVPFATPIGFLPPDGGVAIPNANGALPTVNGINGIPLGTGLSGTAFAGNPNPQNVPQTQLGPDGLGLGFGTITVIDDVLTTSPELGSQSIGQAQGVYVASSADGTTQMMAFTAMVEGGEYGDSLNFYGVFRIGSPSSHLSVIGGTGKFKNARGIAEVRSLIPPGQHVADGAETLLRVLVHLTY* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2740926 2741675 - Chy6G109330.1 Chy06g00405 228114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00405 249 Gene3D - 116 245 IPR044859 -
Chy06g00405 249 PANTHER DIRIGENT PROTEIN 16 5 249 - -
Chy06g00405 249 Pfam Dirigent-like protein 116 225 IPR004265 -
Chy06g00405 249 PANTHER DIRIGENT PROTEIN 24-RELATED 5 249 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00405 - - - csv:101219771 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00405 Chy-Chr6:2740926 Chy09g00742 Chy-Chr9:9862260 3.65E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g832 . . . . . . . . . . . Cma14g01865 . . . Cpe08g00375 Cpe03g01563 . . . . . . . . . . . . . . . . . . Lsi05g01799 . . Cme06g00420 Blo02g00636 . Bda11g00655 Bda13g00030 . . Bma02g00741 Bma06g01622 . . Cmo14g01910 . . . . . . . . . . . . . Cla05g00382 Cam05g0415 Cec05g0420 Cco05g0420 Clacu05g0411 Cmu05g0394 Cre05g0456 . Csa03g01139 Chy06g00405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006899 2 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00405 Chy_Chr06 FPKM 51.537243 59.762901 24.085239 26.462139 9.112615 7.680204 9.324843 12.72904 11.69515 12.603265