Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00407 ATGTCTTTCCTCGAAGAATTTCAAGCCAACCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCATGATTTAGATCAAAGTTTGCAAGGACTAGTGAAACAGAATGAGAAACGCTGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTACTCCAGATACTTCACTCATTCGATTCTCTGATGAAGCTCTTGATGAACAGAAGCATAGCATCAGAATTGCTGACGAAAAGGTTGCTCTTGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAACAGCTTGACCAGTATTTGAAGAATTTTGATGAAAAGCTTCGTCATGAAAGAGGAACTGCTGCTGCTACTGGGTTACCAGCTTCAAGTGTAGATGGTAACACAAAGTCTGGACGGGGAACAGAAGGTGGTAGAGGTGGGCGTAAAAAAAGAAATGGCCAAGCTGCAGCTGCTACAACAGAAGCACCAACTACGGCAAATCCCACAGGAATGGAACTTGAATTACCAGTTGATCCAAATGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAATCCTAATTGCAAAATCGAATGGTTTCATTTTGGCTGTGTTGGTCTAAAAGAACAACCAAAAGGAAAATGGTACTGTTCAGATTGTGCAGGCTCCAAAGATCCTGCTCAGCTAGAGCTAGTCCATAAATTACTTGCAATCCATGTAAATTCTGTTTTTGTTTTAATGCTGCTCAACCAAGAACACCCTCCATTAAAGATGGAAGAAGTGAAACTCCATGGGATGTGGGCAAGTCCTTTTGTTTACAGAGTGAAATGGGGTTTGGAGCTTAAGGGTATACCTTATGAATATGTAGAAGAAGACATCGCTAACAAAACTTCATTGTTGCTTCACTACAATCCTATTCACAAGAAGGTTCCTGTGCTCGTCCATGGTGGAAAACCAGTGTGTGAGTCCATCATCATCCTTGAATACCTTGATGAAATATGGCCTCAATATCCTCTCTTTCCTGTCCATCCTTTCGATAGAGCAACAACTCGCTTTTGGATTAAATATGCTGACAATAAGTTGTTTGGAAGTCGGCTTCTGTTCAGTTCCAGCAGCAGCGAAGAAGAGGAAAAGGCTAAGGCAGAGGGTCTCGAATTCCTGAGAACAATCGAAGAACAATGCCTTGGCGACAAGAAATTCTTCGCCGGAGAGGAGATCGGCGCCTTGGATTTGGCGTTCGGAGGAATAGCGCACTGGTTACCAGTTCTTGAACAAATTACAGGAATCAAACTTCTGAACGCCGATCAGTTCCCTCGCTTGTACGCTTGGACCCAAAACTTCAAGGAATCTGCTGTCATCAGAGATAACCTGCCGGACGCCCAGAAGTTGGCCGCGCTTTACAACGCCCTGCGCCACAAGCAGCTGCGATCTGCTGCAGAGTAA 1470 43.67 MSFLEEFQANLESLPNILQKKYALLHDLDQSLQGLVKQNEKRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEKLRHERGTAAATGLPASSVDGNTKSGRGTEGGRGGRKKRNGQAAAATTEAPTTANPTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSDCAGSKDPAQLELVHKLLAIHVNSVFVLMLLNQEHPPLKMEEVKLHGMWASPFVYRVKWGLELKGIPYEYVEEDIANKTSLLLHYNPIHKKVPVLVHGGKPVCESIIILEYLDEIWPQYPLFPVHPFDRATTRFWIKYADNKLFGSRLLFSSSSSEEEEKAKAEGLEFLRTIEEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGIKLLNADQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNALRHKQLRSAAE* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2751244 2756428 + Chy6G109350.1 Chy06g00407 228116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00407 489 SUPERFAMILY Thioredoxin-like 270 370 IPR036249 -
Chy06g00407 489 CDD PHD_Yng1p_like 185 230 - -
Chy06g00407 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 233 IPR013083 -
Chy06g00407 489 CDD GST_C_Tau 353 479 IPR045074 GO:0004364|GO:0006749
Chy06g00407 489 SFLD Main (cytGST) 266 485 - -
Chy06g00407 489 Pfam Glutathione S-transferase, C-terminal domain 383 457 IPR004046 -
Chy06g00407 489 PANTHER GLUTATHIONE S-TRANSFERASE 267 481 - -
Chy06g00407 489 Gene3D Glutaredoxin 265 348 - -
Chy06g00407 489 CDD ING_plant 11 108 - -
Chy06g00407 489 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 268 347 IPR004045 -
Chy06g00407 489 Pfam Inhibitor of growth proteins N-terminal histone-binding 3 111 IPR024610 -
Chy06g00407 489 SUPERFAMILY FYVE/PHD zinc finger 173 230 IPR011011 -
Chy06g00407 489 SUPERFAMILY GST C-terminal domain-like 341 481 IPR036282 -
Chy06g00407 489 SMART PHD_3 185 230 IPR001965 -
Chy06g00407 489 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 352 475 IPR010987 -
Chy06g00407 489 Gene3D - 2 108 - -
Chy06g00407 489 ProSiteProfiles Zinc finger PHD-type profile. 183 232 IPR019787 -
Chy06g00407 489 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 267 481 IPR045073 -
Chy06g00407 489 SMART ING_2 3 111 IPR024610 -
Chy06g00407 489 MobiDBLite consensus disorder prediction 119 175 - -
Chy06g00407 489 ProSitePatterns Zinc finger PHD-type signature. 186 229 IPR019786 -
Chy06g00407 489 Gene3D - 349 487 - -
Chy06g00407 489 CDD GST_N_Tau 270 343 - -
Chy06g00407 489 SFLD Main.3: Omega- and Tau-like 266 485 IPR045073 -
Chy06g00407 489 Pfam Glutathione S-transferase, N-terminal domain 269 341 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00407 K11346 ING4; inhibitor of growth protein 4 K00799 csv:101220801 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00407 Chy-Chr6:2751244 Chy06g00410 Chy-Chr6:2764519 3.39E-90 dispersed
Chy06g00413 Chy-Chr6:2784795 Chy06g00407 Chy-Chr6:2751244 8.61E-52 dispersed
Chy08g00514 Chy-Chr8:12368850 Chy06g00407 Chy-Chr6:2751244 1.11E-30 dispersed
Chy06g00407 Chy-Chr6:2751244 Chy06g00409 Chy-Chr6:2761728 1.43E-88 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00407 Chy_Chr06 FPKM 0.652856 0.0 1.141691 1.468809 0.304835 0.631936 0.366992 2.573738 1.309648 1.422161