Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00410 ATGACAGAAGTGAAGCTTCATGGAGCTTGGCCAAGCCCTTTCAGTTACAGAGTCATTTGGGCTTTGGCACTCAAAGGCATTCCCTACGAATATGTTGAAGAAGATCTCTCCAACAAATCTCCTCTGCTTTTGCAATACAATCCTGTTCATAAGAAGATTCCAGTCTTCGTCCATGCCGGAAAACCCATCTGCGAATCCATGATTATCCTTCAGTATATCGATGAGACCTGGCCGGAGAATCCCCTTTTGCCCTCCGACCCTATTCAGAGAGCTGCAGCTCGGTTCTGGATCAAATTCATAGAAGACAAGAGCTTGGAGGTTTGGGGATTGTTTATCGCGGAAGGGGAAGAAGATAAGGAAAAGGCGAGAAAAGCAACCTTGGAAGTGTTGAAGACAGTGGAAGAACAGGCACTCGGCGATAAGAAATTCTTCGGCGGCCATGAAATTAACATGGTGGATTTGGCGTACGGGTTCCTTGCGCGGTGGCTGCCAGTGATGGAGGAGGTGGTGGATGTGAAAATCCTTGAACCAAATACAAACCCCCGGCTCTACATTTGGGCAGAGAACTTCCGGCAAGCCGCTGTGATCAGAGACAATCTGCCGGATCACGACGAGATGGTGCCGCGGGTCAGGTCTCGGAGGGAGCAGCTGCTGGAAATGGCGAAGAAATCATAA 675 49.33 MTEVKLHGAWPSPFSYRVIWALALKGIPYEYVEEDLSNKSPLLLQYNPVHKKIPVFVHAGKPICESMIILQYIDETWPENPLLPSDPIQRAAARFWIKFIEDKSLEVWGLFIAEGEEDKEKARKATLEVLKTVEEQALGDKKFFGGHEINMVDLAYGFLARWLPVMEEVVDVKILEPNTNPRLYIWAENFRQAAVIRDNLPDHDEMVPRVRSRREQLLEMAKKS* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2764519 2765276 + Chy6G109380.1 Chy06g00410 228119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00410 224 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Chy06g00410 224 CDD GST_N_Tau 4 77 - -
Chy06g00410 224 CDD GST_C_Tau 87 213 IPR045074 GO:0004364|GO:0006749
Chy06g00410 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 210 IPR010987 -
Chy06g00410 224 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Chy06g00410 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Chy06g00410 224 Gene3D Glutaredoxin 1 85 - -
Chy06g00410 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 213 IPR045073 -
Chy06g00410 224 Pfam Glutathione S-transferase, C-terminal domain 113 190 IPR004046 -
Chy06g00410 224 SFLD Glutathione Transferase (cytosolic) 1 222 IPR040079 -
Chy06g00410 224 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Chy06g00410 224 Gene3D - 86 221 - -
Chy06g00410 224 SFLD Main.3: Omega- and Tau-like 1 222 IPR045073 -
Chy06g00410 224 PANTHER GLUTATHIONE S-TRANSFERASE 1 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00410 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 446.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00407 Chy-Chr6:2751244 Chy06g00410 Chy-Chr6:2764519 3.39E-90 dispersed
Chy06g00410 Chy-Chr6:2764519 Chy06g00413 Chy-Chr6:2784795 7.07E-71 dispersed
Chy06g00412 Chy-Chr6:2782021 Chy06g00410 Chy-Chr6:2764519 2.59E-12 dispersed
Chy06g01649 Chy-Chr6:19149029 Chy06g00410 Chy-Chr6:2764519 1.12E-08 dispersed
Chy07g01042 Chy-Chr7:15362524 Chy06g00410 Chy-Chr6:2764519 1.95E-54 dispersed
Chy10g00583 Chy-Chr10:12458940 Chy06g00410 Chy-Chr6:2764519 2.66E-06 dispersed
Chy10g00609 Chy-Chr10:12668897 Chy06g00410 Chy-Chr6:2764519 5.05E-08 dispersed
Chy06g00409 Chy-Chr6:2761728 Chy06g00410 Chy-Chr6:2764519 4.06E-106 tandem
Chy06g00410 Chy-Chr6:2764519 Chy06g00411 Chy-Chr6:2765740 3.08E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00410 Chy_Chr06 FPKM 2.957594 5.786897 0.876116 1.057773 5.029969 6.683951 6.048063 14.477789 13.755761 13.451158