Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00411 ATGGATGAAGGGAAGCTGCATGGAAATTGGTTAAGCCTTTCCGCATGCAGAGTCATTTGGGCTCTGTCCCTCAAAGACATACCCTACCAATATGAAGAAGAAGGTATCACCAACAAAACTCCTTTCCTTCCTTATTCTAACTCCGTCTCTGTCATCGTGGATGGAAAATCGATCTCCAACTCCTCTGTTATTCTCGAATACATTGACGAGACGTGGCCGCAAAACCCCTTACTCCCTTCCGATCTCCTCGACAAAGCTACGGCTCGGTTTTGGATTCGATTCATTGATGATAAGGGGGCGGCCATATCTAGAATGTTCTACCCGGGCGGGAAGGAACAGGGGGGGAAGGTGGAAAGCTTAGAGATGCTGCGAATCCTAGAAGAGGAAGTGATCGGCGAGGAGAAATTCTTCGGCGGAGAGAAGATCGGGATGGTGGACTTGGCATTCGGAGAATTTGTAGAGTGGTTGGGAGTGTTTGAAGGAGTAATCGGAGAGAAATTGTTGGAATCCGGCTCATTTCCTCGTCTAGAAGCTTGGAGCAGAGCTTTCATGGCAGTTCCTGCGATCAGAGAGAATCGTGCGGATCGAAATGGGATGGTGGAGAATATCAAGCGTTTTGGGATTCCGCTTCCGCAACATCGTTCTTCGTTGAATCCATCCAATGATATGAAGAACGTTGTTGGGTTTTTGGAGCTCTTCCGATGTTTTTGTGAACTCGTTTCTATCGTTGGCAGGCCGAACAAGAAAGCTCCTCCATTATTGACAGTAATGGATGAAGTGAAGCTATATGGGCACTGGTCGAGTCCTTTCGTTTATAGAGTTATATGGGCTTTGAAAATCAAAGCTATTCCCTACGAATATGTAGAAGAAGATATTCACAACAAAAGTCCTTTGCTTCTTCACTACAACCCTGTCTACAAGAGGGTTCCTGTCCTCGTTCATGGCGGAAAATCTATCTGTGAGTCCACTGTCATCCTTGAATACATCGACGAGACATGGCCACAAAACCCTTTACTTCCTGTTGATCCACTCGATCGAGCTACCGCACGATTTTGGATTCAATTCGTTGAGGATATGGGACTAACCACATGGACAATGTTTTGTTCGAGTGGGGAGGAACGAGAAAAGCAAAAGCGAGAGAGCTTAGAGATGCTGCAAATTGTAGAAGAGAAAGCGATCGACGACCAAAAATTCTTTGGTGGAGAGAAGATCGGGATGGTAGATTTGGTGTATGGAGTATTTGGATATTGGTTGGGAGTGATCGAAGATCTAATTGGCGAGAAATTAATAGAAACATCTTCGTTTCCTCAACTGCATGCTCGGATAAAAGTTTTCTTGCAAGATCCAATAATTCGAGAGAATTATCCCGATCAAGATCGGATGGTCATCTCTTTCAAAGCCATAAGAGAGCGACTTCTTGGATCAATATGA 1431 45.0 MDEGKLHGNWLSLSACRVIWALSLKDIPYQYEEEGITNKTPFLPYSNSVSVIVDGKSISNSSVILEYIDETWPQNPLLPSDLLDKATARFWIRFIDDKGAAISRMFYPGGKEQGGKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEGVIGEKLLESGSFPRLEAWSRAFMAVPAIRENRADRNGMVENIKRFGIPLPQHRSSLNPSNDMKNVVGFLELFRCFCELVSIVGRPNKKAPPLLTVMDEVKLYGHWSSPFVYRVIWALKIKAIPYEYVEEDIHNKSPLLLHYNPVYKRVPVLVHGGKSICESTVILEYIDETWPQNPLLPVDPLDRATARFWIQFVEDMGLTTWTMFCSSGEEREKQKRESLEMLQIVEEKAIDDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLIGEKLIETSSFPQLHARIKVFLQDPIIRENYPDQDRMVISFKAIRERLLGSI* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2765740 2768028 + Chy6G109390.1 Chy06g00411 228120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00411 476 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Chy06g00411 476 SUPERFAMILY GST C-terminal domain-like 70 205 IPR036282 -
Chy06g00411 476 SUPERFAMILY Thioredoxin-like 259 358 IPR036249 -
Chy06g00411 476 CDD GST_C_Tau 343 468 IPR045074 GO:0004364|GO:0006749
Chy06g00411 476 CDD GST_C_Tau 84 206 IPR045074 GO:0004364|GO:0006749
Chy06g00411 476 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 81 206 IPR010987 -
Chy06g00411 476 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 206 IPR045073 -
Chy06g00411 476 Pfam Glutathione S-transferase, N-terminal domain 260 331 IPR004045 -
Chy06g00411 476 SFLD Main.3: Omega- and Tau-like 257 472 IPR045073 -
Chy06g00411 476 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 257 470 IPR045073 -
Chy06g00411 476 CDD GST_N_Tau 260 333 - -
Chy06g00411 476 Gene3D Glutaredoxin 255 341 - -
Chy06g00411 476 Gene3D Glutaredoxin 1 80 - -
Chy06g00411 476 SFLD Glutathione Transferase (cytosolic) 6 185 IPR040079 -
Chy06g00411 476 SFLD Glutathione Transferase (cytosolic) 257 472 IPR040079 -
Chy06g00411 476 SUPERFAMILY Thioredoxin-like 5 97 IPR036249 -
Chy06g00411 476 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 76 IPR004045 -
Chy06g00411 476 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 342 465 IPR010987 -
Chy06g00411 476 PANTHER GLUTATHIONE S-TRANSFERASE 257 470 - -
Chy06g00411 476 Gene3D - 342 476 - -
Chy06g00411 476 Gene3D - 81 208 - -
Chy06g00411 476 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 258 337 IPR004045 -
Chy06g00411 476 PANTHER GLUTATHIONE S-TRANSFERASE 1 206 - -
Chy06g00411 476 Pfam Glutathione S-transferase, C-terminal domain 120 187 IPR004046 -
Chy06g00411 476 SUPERFAMILY GST C-terminal domain-like 331 471 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00411 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207882 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00409 Chy-Chr6:2761728 Chy06g00411 Chy-Chr6:2765740 3.74E-66 dispersed
Chy06g00411 Chy-Chr6:2765740 Chy06g00413 Chy-Chr6:2784795 4.61E-39 dispersed
Chy07g01043 Chy-Chr7:15369291 Chy06g00411 Chy-Chr6:2765740 3.27E-19 dispersed
Chy06g00410 Chy-Chr6:2764519 Chy06g00411 Chy-Chr6:2765740 3.08E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00411 Chy_Chr06 FPKM 0.115152 0.0 0.0 0.0 0.218127 0.0 0.288331 0.0 0.182672 0.0