Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00413 ATGGCCAACAAAAGCCCTCTCCTCCTCCACTACAATCTCTTCTACAAGAAGATTCCCGTGCTCGTCCATGCAGGAAACCCTATCTGCGAATCCGCCATCATCCTCGAGTACATAAACAACACTTGGCCGGAAAATCCTCTGCTGCCGTCCGATCCTTTCGACAGAGCTGTCTCTCGCTTCTGGATCAAATTCATAGAGGATAAGGAAGCAACGATGAGGAGGATTTTTACAGCGGGAGAGGAAGAGAGAGAGGAGGCGAGGAGAGAAACCCTAGAAGTTCTGAAGACGATCGAAGAGCGGGGACTCGGGGATGGGAAGTTCTTCGGAGGAGAGGAGATTAATATGGTTGATTTGGTGTATGGATGGTTGGCTGTATGGACGAAGGTTTTTGAAGAAGTTCTGGATATGAAGATTATGGACGGAATTGAGTTCCCTCGCCTCCATGCTTGGGCGGAGAATTTCAAAGCCGCCGCCGTTATCAGAGATCACATTCCCGATCACCATCAAATGGTGCTCCATCACATTCCCGATCACCATCACTCGTATTTACACTGCTTTAATTGTTATGGAACAGATGGAAAAGAACCGAAACAAGTTAAACTCAGGGACGACTGGAGGCAACGCTCCAGACCAATTCCTCCTGGAGGCACCTACCCTGCCAAAGAACAGTGCAGTCGATGTGGCTTGTGTGATACATATTACATTGCTCACGTGAAGGATGCGTGTGCTTTCTTGGGGGATGGCATGTCAAGAATTGAAGAAATGGAACCTGTAGTTCACGGTAGAGGGAGGAAAACAGATACGCTGGATGAGACATATTTTGGAGTTCATGAGAAGCTATTATACGCTCGTAAGATTAAACCAGTGGAAGGAGCTCAATGGACAGGGATAGTAACAACCATAGCAGTTGAAATGCTTAAATCAGGCATGGTCGAGGCTGTTGTTTGTGTGCAGAGTGATCCAGAGGACAGACTCAGTCCAAGGCCTATTTTAGCAAGGACACCAGAAGAAGTCCTAGCAGCCAGAGGAGTAAAGCCAACGTTGTCTCCCAACTTGAATACCCTTGCTCTAGTTGAGGCAGCAGGAGTCAAACGTCTTCTTTTCTGTGGTGTGGGCTGCCAAGTGCAAGCATTAAGATCTGTGGAGCAGCATTTGAATCTGGAGAAGCTTTATGTACTGGGCACTAATTGTGTGGATAATGGAACTCGAGAAGGACTGGATAAATTTCTCAAGGCGGCAAGTACAGAACCAGAGACAGTTCTTCATTACGAGTTCATGCAAGATTACAAGGTGCATCTCAAGCATTTGGATGGTCATATTGAAGAGGTTCCATACTTTTGTCTACCTGCAAATGACTTGGTCGATGTTATTGCTCCATCTTGCTACAGCTGTTTTGACTATACAAATGCTCTAGCGGATCTGGTTGTTGGTTACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACCCAACATCCACAGTATATTACTGTTAGAAATGAGCGTGGTAGAGAGATGCTGGGTTTAGTAGAACAGTACCTAGAAATTACTCCAACAATTAGCAATGGTAACCGAAGACCTTTAGTTATGGAGACTGTGAAGGCAGATGATGATGCTAAGCTTGGAAAAGGTCCTTCACAGCCTGCTCCAAAATTCATTGGGAACATCATAGCCTTCTTTCTGAACTTGATTGGCCCAAAAGGTCTGGAGTTCGCTCGTTATTCACTGGATTACCATACCATCCGAAACCATTTATATGTCTCCCGAATATGGGGAAAACAAAGAGCTGATAAACATGAACCCACATATGCTAAAAAGATAGTGGATTTGTACAACCAGAAGGGTGAAATTGATCGCATACTTTCCAACACGAAGTAA 1878 45.26 MANKSPLLLHYNLFYKKIPVLVHAGNPICESAIILEYINNTWPENPLLPSDPFDRAVSRFWIKFIEDKEATMRRIFTAGEEEREEARRETLEVLKTIEERGLGDGKFFGGEEINMVDLVYGWLAVWTKVFEEVLDMKIMDGIEFPRLHAWAENFKAAAVIRDHIPDHHQMVLHHIPDHHHSYLHCFNCYGTDGKEPKQVKLRDDWRQRSRPIPPGGTYPAKEQCSRCGLCDTYYIAHVKDACAFLGDGMSRIEEMEPVVHGRGRKTDTLDETYFGVHEKLLYARKIKPVEGAQWTGIVTTIAVEMLKSGMVEAVVCVQSDPEDRLSPRPILARTPEEVLAARGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMLGLVEQYLEITPTISNGNRRPLVMETVKADDDAKLGKGPSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRIWGKQRADKHEPTYAKKIVDLYNQKGEIDRILSNTK* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2784795 2793268 + Chy6G109410.1 Chy06g00413 228122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00413 625 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 46 IPR004045 -
Chy06g00413 625 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 364 517 IPR007525 -
Chy06g00413 625 SUPERFAMILY GST C-terminal domain-like 41 172 IPR036282 -
Chy06g00413 625 Pfam Glutathione S-transferase, C-terminal domain 81 152 - -
Chy06g00413 625 Pfam Glutathione S-transferase, N-terminal domain 3 40 IPR004045 -
Chy06g00413 625 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 51 172 IPR010987 -
Chy06g00413 625 CDD GST_C_Tau 52 173 IPR045074 GO:0004364|GO:0006749
Chy06g00413 625 Gene3D Glutaredoxin 1 50 - -
Chy06g00413 625 SFLD Glutathione Transferase (cytosolic) 2 174 IPR040079 -
Chy06g00413 625 SFLD Main.3: Omega- and Tau-like 2 174 IPR045073 -
Chy06g00413 625 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 282 355 IPR007516 -
Chy06g00413 625 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 195 616 IPR045220 GO:0016491
Chy06g00413 625 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 195 616 - -
Chy06g00413 625 SUPERFAMILY Thioredoxin-like 3 48 IPR036249 -
Chy06g00413 625 SUPERFAMILY Prismane protein-like 242 345 IPR011254 GO:0003824|GO:0016491
Chy06g00413 625 Gene3D - 51 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00413 K18010 HCAR; 7-hydroxymethyl chlorophyll a reductase [EC:1.17.7.2] - csv:101208123 888.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00410 Chy-Chr6:2764519 Chy06g00413 Chy-Chr6:2784795 7.07E-71 dispersed
Chy06g00411 Chy-Chr6:2765740 Chy06g00413 Chy-Chr6:2784795 4.61E-39 dispersed
Chy06g00413 Chy-Chr6:2784795 Chy06g00407 Chy-Chr6:2751244 8.61E-52 dispersed
Chy06g00412 Chy-Chr6:2782021 Chy06g00413 Chy-Chr6:2784795 5.39E-24 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g813 . . Bda03g01105 . Bpe04g00973 . Bma04g01031 . . . . Cma14g01860 . Car14g01665 . . Cpe03g01557 Bhi01g00032 . . . . . . . . . . . . . Cone14ag0198 . . . Lsi05g01788 . . Cme06g00433 . . . . . . . . . . Cmo14g01904 . . . . . . . . . . . . . Cla05g00391 Cam05g0425 Cec05g0430 Cco05g0430 Clacu05g0421 Cmu05g0403 Cre05g0465 . Csa03g01148 Chy06g00413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011151 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00413 Chy_Chr06 FPKM 46.54528 50.555088 45.057545 46.673153 3.370651 3.735918 4.732965 1.654257 2.212728 2.676979