Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00414 ATGGATGGTGATCACTTGTTTGATCATCGGTGTATATGGGTCAATGGACCGGTGATCGTCGGAGCAGGACCATCTGGACTGTCAGTAGCAGCTGCTCTCAAACAACAAGGAGTCCCGTTCGTAGTCGTTGACCGAGCTGACTGCATTGCCTCTCTTTGGCAGCACCGGACCTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAGCTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCCTCCAAGTTTCAGTTCATTTCTTACTTGGAATCCTATGCCAACCATTTTGATATCACCCCATGTTTCAACGAAACGGTACAGTCGGCCAAGTATGATGAAACTTTTGGCTTGTGGCGAGTCAAAACCCTTTCGTTGAGTCCGAAGCCAACTCAGGTCGAGTACATTTGCCGGTGGTTGGTCGTTGCCACAGGAGAGAACGCTGAGAAGGTTGTGCCGGAGTTTGAAGGGATGGAGGAATTTGGTGGTCATGTCATGCATGCTTGTGAATACAAATCCGGTGAGGCTTACCGTGGGAAACGGGTGCTTGTCGTTGGGTGTGGGAACTCCGGCATGGAAATTTCACTTGATCTTTGTAACCATGATGCCAAGCCATCCATGGTGGTACGAAGCTCGGTTCATGTACTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTTGCAATTTCACTGATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGTTGATCATTGCCAGACTCGTTCTTGGGAACGTTGAGAAGTACGGACTCAAGAGGCCATCAGTGGGACCTTTGCAGCTTAAGAATGCCGCTGGGAAGACACCCGTATTGGATATTGGAGCACTGCAGAAGATAAGAGCCGGCGAGATCAAGGTGGTGGCCGGAATAAAAAAATTCCGGCGAGGTGCAGTAGAACTGGTTAATGGAGAAGTTATAGAGATCGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTACGCTGTTGGGTTTACAAGAAAAGGCTTATCAGGAGCTTCACTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAAAAGAGAAAATCAGTGGCAGCTCGCCACAGAAGATGCATTTCACATTTTTAA 1248 47.2 MDGDHLFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDITPCFNETVQSAKYDETFGLWRVKTLSLSPKPTQVEYICRWLVVATGENAEKVVPEFEGMEEFGGHVMHACEYKSGEAYRGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIIARLVLGNVEKYGLKRPSVGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVAGIKKFRRGAVELVNGEVIEIDSVILATGYRSNVPSWLKENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHF* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2795258 2796971 - Chy6G109420.1 Chy06g00414 228123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00414 415 PRINTS Pyridine nucleotide disulphide reductase class-II signature 16 38 - -
Chy06g00414 415 PRINTS Pyridine nucleotide disulphide reductase class-II signature 181 205 - -
Chy06g00414 415 SUPERFAMILY FAD/NAD(P)-binding domain 181 394 IPR036188 -
Chy06g00414 415 PRINTS FAD-dependent pyridine nucleotide reductase signature 17 36 - -
Chy06g00414 415 PRINTS FAD-dependent pyridine nucleotide reductase signature 141 159 - -
Chy06g00414 415 PRINTS FAD-dependent pyridine nucleotide reductase signature 185 203 - -
Chy06g00414 415 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 5 413 - -
Chy06g00414 415 Pfam Flavin-binding monooxygenase-like 19 336 IPR020946 GO:0004499|GO:0050660|GO:0050661
Chy06g00414 415 Gene3D - 17 399 IPR036188 -
Chy06g00414 415 SUPERFAMILY FAD/NAD(P)-binding domain 18 217 IPR036188 -
Chy06g00414 415 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 5 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00414 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221268 847.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00414 Chy-Chr6:2795258 Chy11g01880 Chy-Chr11:25027961 0 dispersed
Chy02g01302 Chy-Chr2:9595493 Chy06g00414 Chy-Chr6:2795258 1.14E-18 transposed
Chy02g01877 Chy-Chr2:21433792 Chy06g00414 Chy-Chr6:2795258 1.80E-173 transposed
Chy02g02075 Chy-Chr2:25093248 Chy06g00414 Chy-Chr6:2795258 6.46E-17 transposed
Chy03g01159 Chy-Chr3:14817895 Chy06g00414 Chy-Chr6:2795258 0 transposed
Chy03g01231 Chy-Chr3:15403049 Chy06g00414 Chy-Chr6:2795258 0 transposed
Chy06g01024 Chy-Chr6:8004455 Chy06g00414 Chy-Chr6:2795258 3.57E-43 transposed
Chy11g00782 Chy-Chr11:11016152 Chy06g00414 Chy-Chr6:2795258 4.04E-12 transposed
Chy04g00916 Chy-Chr4:12949343 Chy06g00414 Chy-Chr6:2795258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00414 Chy_Chr06 FPKM 12.184123 12.809343 9.146433 10.845174 5.766711 5.491757 5.78024 2.021908 1.65865 1.894743