Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00417 ATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACCACCAACGCCACCGCCGCTGCTAATTTCATCTGCGACCAATTCACCACCGTCACCAATAACTTTTCCGACACCAGAAATGCCCTCGATAATACCTACCTCCTCTTCTCCGCCTACCTCGTTTTCTCTATGCAACTCGGCTTTGCCATGCTCTGTGCCGGTTCTGTCCGCGCCAAAAACACTATGAACATTATGCTTACTAATGTCCTCGACGCTGCTGCGGGAGGCCTCTTTTATTACCTTTTTGGATACGCCTTTGCATTCGGCTCCCCTTCTGGTGGCTTCATCGGTCGTCATAACTTTGGCCTCACCTCATTTCCGACCTCCACTGCTGATTACAGTGGTTTTCTTTATCAGTGGGCTTTTGCGATCGCTGCTGCTGGGATTACCAGTGGATCTATTGCTGAGCGGACTCAGTTTGTTGCTTATTTGATTTATTCCTCTGTTTTGACTGGATTTGTTTATCCGGTGGTTTCTCACTGGTTTTGGTCGCCTGATGGTTGGGCTGGGGTTATGAAATCGGATGGTCATTTGTTATTTGGGTCGGGAGTTATCGATTTTGCTGGCTCCGGAGTCGTTCATATGGTTGGGGGAATTGCTGGACTATGGGGGGCGTTGATCGAAGGGCCGAGAATCGGTCGTTTTGATCACAATGGCCGGTCGGTTGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCATTCACGAAGATTCTCGTCCCTTACACCACAGGAAACTTCTATGGCCAATGGAGCGCGGTCGGACGAACAGCAGTAACCACCACACTCGCCGGATGCACGGCGGCACTCACCACGCTTTTCGGGAAGCGATTCCTCTCAGGCCATTGGAACGTGACGGACGTTTGTAACGGACTCCTCGGCGGGTTTGCCGCCATCACAGCCGGCTGCTCCGTTGTCGAACCATGGGCAGCAATCATCTGCGGATTTGTCGCCGCCATCGTACTAATAACCTGCAACCGAATAGCAGAGATAGTGAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGTGGGTGTGGCGCTTGGGGAGTGATCTTCACCGCACTCTTTGCAACGGAGGAGTATGTAACTGAAGTGTACGGTGGATCAGGGCGGCCCTACGGACTGCTGATGGGTGGCGGCGGGAGATTACTGGCAGCCCATTTAATACAGATATTGGTTATCGTGGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTACGTTCTTCATAAGTTGAAGCTTCTTAGAATCTCCACTGAAGATGAAATGGCAGGGATGGATCTAACCCGCCATGGAGGATTTGCTTATATATATCACGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTGGAACCAAAATCTTCCACTCCTACTGGTGATTATTGA 1503 51.23 MDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTRNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSGGFIGRHNFGLTSFPTSTADYSGFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGHLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHNGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAIVLITCNRIAEIVKYDDPLEAAQLHGGCGAWGVIFTALFATEEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFYVLHKLKLLRISTEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSSTPTGDY* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2834934 2836436 - Chy6G109450.1 Chy06g00417 228126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00417 500 PANTHER AMMONIUM TRANSPORTER 6 494 - -
Chy06g00417 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 494 - -
Chy06g00417 500 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy06g00417 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Chy06g00417 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy06g00417 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Chy06g00417 500 SUPERFAMILY Ammonium transporter 44 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00267 Chy-Chr5:2437527 Chy06g00417 Chy-Chr6:2834934 0 dispersed
Chy05g00737 Chy-Chr5:10134281 Chy06g00417 Chy-Chr6:2834934 0 dispersed
Chy05g00740 Chy-Chr5:10210856 Chy06g00417 Chy-Chr6:2834934 0 dispersed
Chy02g00531 Chy-Chr2:3198504 Chy06g00417 Chy-Chr6:2834934 2.43E-16 transposed
Chy04g01131 Chy-Chr4:17483576 Chy06g00417 Chy-Chr6:2834934 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00417 K03320 - csv:101208366 938.717