Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00421 ATGGATTCTCCTATCCCCTTCCAAGACCTTAATCTTCTCCCTGACCCATCATCCACTGCTGTAATGACCGCCGCAACTTCCCCTAAAACAGCCACTGGAATCAACTCTTCTTTCAACAAATTTGTTGACACCGGCAAGTTGTTGACCCCTAAACTTGAACCTAAGCTCGAGCCCTTCGACGATCTTTTCGAGACTCGGGAGTCTCAACAACCCCAATCAGTTCAGCAACCCTTCTTGTCCACCCCTTCTTCTAACTTCTTCTCTAACACTGACTTCTCTCAAACCCCTTTTTCAGACCAAAATCATACACCGCTTTCTCAGTCTTCATCCATTTCCTCTGACAAAGACAATGTTTACTCCGAATTTTACCGCATTTCTCAGCTGTTCAGGTCTGCTTTTGGTAAAGGACTTCAGAGCTACGGCGATGCCGATGTTGAAGTTGTGGATCCTGATACTCAAGCAATTGTCCCTGTTCCGGAGGAGAATCAGATTTCTACTGTGGTCGTCTCTAAGAGGAGGTATGATAAAAGGTCTTCTGAACTCGTCAGAGTCACTGATCTTGGGGTTGAGGACCAGAGGTACTTCCGAGATGTGGTGAGACGGACCAGGATGATTTTCGATTCGCTGCGTGTCTTATCTACGGCGGAGGAGGAGAAGAGTCCCGGACTAATGCGGCGACTTCGGGGTGATTTGAGGGCTTCCTCCTTGATGAGAGAGCGTGGACTGTGGTTGAATCGAGACAAACGGATTGTTGGTTCGATACCAGGGGTGCACATTGGCGATCTATTCTTCTTTAGGATGGAATTGTGTGTTGTCGGATTGCATGGTCAGGCTCAAGCTGGAATTGACTATGTTCCTGCGAGTCAGAGCTCCAATGGCGAGCCAATTGCCACTAGTATAATTGTTTCTGGTGGATACGAGGACGATGAGGATGCCGGGGACATGATAATCTACACGGGTCATGGTGGGCAAGACAAATTTTCAAAACAATGTATGCACCAGAAACTTGAAGGTGGGAATCTTGCACTGGAGAGAAGTATGCACTACGGGATTGAAGTGAGGGTTATTCGAGGTATGAAGTACGCAGGCAGTGTAGCAAGTAAGATTTATGTATACGATGGTCTGTATAGAATTCTTGACTGTTGGTTTGATGTGGGGAAATCGGGTTTTGGTGTCTACAAGTATAAGCTTTTAAGAATTGATGGTCAAGCCGAAATGGGTAGCTCCATTTTGAAGTTTGCGGAGAACCTCAGGACCAAACCATTGTCTTTGAGGCCTTCTGGTTATCTCAGTCTCGACATTTCAATGAAGAAGGAGGCAGTTCCAGTTCTCTTGTTTAATGATATTGACAATGATCAAGAACCATTGTATTATGAGTATCTTGTTAGGACTGTGTTCCCACCTTTCGCCTTTCACCAATCAGGAAGTGGTACTGGGTGTAGTTGTGTTACAAGTTGCGTTCATGATTGTTTTTGTGCTATGAAAAATGGTGGGGAGTTTGGTTATGATCAAAATGGATTTCTAGTTAGAGGGAAGCCTATAATTTTCGAATGTGGACCATTCTGTCAGTGCCCCCCTCAATGTCGAAATCGTGTTTCACAGAAGGGCTTGAAGCACAGACTTGAAGTGTTTAGGTCCAGGGAAACAGGTTGGGGTGTTAGATCTTTGGACTTGATACACGCTGGTGCTTTTATATGTGAATATGCAGGAGTTGTCCTCACGAGGGAACAAGCTCAAGTTTTTTCCATGAATGGTGATACATTAATATATCCAAATCGTTTTTCAGATAGATGGGCAGAATGGGGTGATCTATCTCAAATATATTCTAATTATGTGCGGCCATCTTACCCTTCTGTTCCTCCTCTCGATTTTGCAATGGATGTATCCAGAATGAGGAATGTTGCTTGTTATATAAGCCATAGTACATCTCCAAACGTGTTGGTGCAGTTCGTGTTATATGATCACAATAATTTAATGTTTCCTCACCTTATGTTGTTTGCAATGGAAAATATCCCTCCTCTGAGGGAGCTTAGCATTGACTATGGTGTGGCTGATGATTGGTCAGGGAAACTTGCTATCTGTAACTAA 2088 44.2 MDSPIPFQDLNLLPDPSSTAVMTAATSPKTATGINSSFNKFVDTGKLLTPKLEPKLEPFDDLFETRESQQPQSVQQPFLSTPSSNFFSNTDFSQTPFSDQNHTPLSQSSSISSDKDNVYSEFYRISQLFRSAFGKGLQSYGDADVEVVDPDTQAIVPVPEENQISTVVVSKRRYDKRSSELVRVTDLGVEDQRYFRDVVRRTRMIFDSLRVLSTAEEEKSPGLMRRLRGDLRASSLMRERGLWLNRDKRIVGSIPGVHIGDLFFFRMELCVVGLHGQAQAGIDYVPASQSSNGEPIATSIIVSGGYEDDEDAGDMIIYTGHGGQDKFSKQCMHQKLEGGNLALERSMHYGIEVRVIRGMKYAGSVASKIYVYDGLYRILDCWFDVGKSGFGVYKYKLLRIDGQAEMGSSILKFAENLRTKPLSLRPSGYLSLDISMKKEAVPVLLFNDIDNDQEPLYYEYLVRTVFPPFAFHQSGSGTGCSCVTSCVHDCFCAMKNGGEFGYDQNGFLVRGKPIIFECGPFCQCPPQCRNRVSQKGLKHRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTREQAQVFSMNGDTLIYPNRFSDRWAEWGDLSQIYSNYVRPSYPSVPPLDFAMDVSRMRNVACYISHSTSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPLRELSIDYGVADDWSGKLAICN* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2864922 2867009 + Chy6G109490.1 Chy06g00421 228130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00421 695 Pfam SAD/SRA domain 251 403 IPR003105 -
Chy06g00421 695 ProSiteProfiles YDG domain profile. 252 399 IPR003105 -
Chy06g00421 695 SUPERFAMILY PUA domain-like 233 412 IPR015947 -
Chy06g00421 695 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 94 695 IPR025794 GO:0016571
Chy06g00421 695 Gene3D SET domain 408 695 IPR046341 -
Chy06g00421 695 MobiDBLite consensus disorder prediction 90 113 - -
Chy06g00421 695 Gene3D - 249 407 IPR036987 -
Chy06g00421 695 Pfam Pre-SET motif 434 531 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy06g00421 695 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 75 693 - -
Chy06g00421 695 SMART preset_2 431 523 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy06g00421 695 SMART set_7 539 688 IPR001214 GO:0005515
Chy06g00421 695 ProSiteProfiles SET domain profile. 539 682 IPR001214 GO:0005515
Chy06g00421 695 SUPERFAMILY SET domain 423 686 IPR046341 -
Chy06g00421 695 SMART G9a_1 247 403 IPR003105 -
Chy06g00421 695 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 75 693 - -
Chy06g00421 695 ProSiteProfiles Pre-SET domain profile. 478 536 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy06g00421 695 Pfam SET domain 550 682 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00421 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - csv:101222210 1397.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00421 Chy-Chr6:2864922 Chy08g00106 Chy-Chr8:2370294 1.66E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18091 PF02182 SAD_SRA 8.90E-49 CL0178 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00421 Chy_Chr06 FPKM 39.038929 42.230709 29.400816 27.291265 16.006313 12.829429 15.718674 52.770786 51.098118 51.145073