Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00428 ATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCTGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTTCTTTACGACAGAAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTACGCAACAAAATCAGAAATGGAAACAGCTCTTGAAGCTATTAATGAACTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAG 642 44.24 MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETALEAINELELEGRVIRVSLAEGKQAHG* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2909506 2911675 - Chy6G109560.1 Chy06g00428 228137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00428 213 PANTHER TRANSFORMER-2-RELATED 25 78 - -
Chy06g00428 213 PANTHER TRANSFORMER-2-RELATED 122 210 - -
Chy06g00428 213 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 122 210 - -
Chy06g00428 213 Gene3D - 11 119 IPR012677 -
Chy06g00428 213 SUPERFAMILY RNA-binding domain, RBD 33 122 IPR035979 GO:0003676
Chy06g00428 213 Gene3D - 120 213 IPR012677 -
Chy06g00428 213 SUPERFAMILY RNA-binding domain, RBD 125 210 IPR035979 GO:0003676
Chy06g00428 213 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 25 78 - -
Chy06g00428 213 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 75 115 - -
Chy06g00428 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Chy06g00428 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Chy06g00428 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Chy06g00428 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 202 IPR000504 GO:0003723
Chy06g00428 213 SMART rrm1_1 40 113 IPR000504 GO:0003723
Chy06g00428 213 SMART rrm1_1 131 204 IPR000504 GO:0003723
Chy06g00428 213 PANTHER TRANSFORMER-2-RELATED 75 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00428 - - - csv:101203203 363.999
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02061 Chy-Chr4:26134807 Chy06g00428 Chy-Chr6:2909506 1.09E-12 dispersed
Chy06g00428 Chy-Chr6:2909506 Chy06g02152 Chy-Chr6:25845202 7.92E-08 dispersed
Chy06g00428 Chy-Chr6:2909506 Chy01g01890 Chy-Chr1:24224435 1.03E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00428 Chy_Chr06 FPKM 1.404382 0.0 6.528468 5.755124 29.532501 24.117935 27.156395 0.0 0.542478 1.48129