Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00436 ATGGAGAAGAGAACAGAGATAATTAATCAAAGGAGGCGAGCGTGTAAGCTAATAGATCAACAATTAAAGCTGCCGGTTGCCGTCCGTTGTCTGGGAAAATCCTGCTCTGCGGCTGCTGGACTTGTAAATCGTATATCTCCGGCTAAAATGAACTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCAGTCGTCTCCAGGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGGCACATTTTGGACTATGGGAAATGTCCTGTTACAGGCGAGCCACTTTCCATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGTATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTCTTGGTGCTATCCAATTTTGCATTAGAACAACAGCTACATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTGCTTGCACAGGCAGAAAGGCAGATGCCTTTGTCGTCAACCTCATTTTCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGGTTTGTCCTCTCAATCACCCATCAGCATGGATTTTGATGAATTCCTTTGTTCTAATTTGAGATTTTTCGTTTTTTCAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGACGCTGTTATCTCTGAGCTCACAGAATGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTGCCACGTTGGTTCCTGTTGAGGCTTTAGAAAATTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCGGGCATTATGTCTCTTGATATCCATCATGAGAAGGATGTGATTGCGACTGGAGGACTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTGTCTACACTAAGTGGCCATTCGAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATCTATTCTTGACTGGTTCAGCTGATAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTGAAGGATCATACAGCTGAGGTCCAAGCTGTTACTGTCCATGCTACCAATGACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGAACTTGCTTCAGGATTATGCCTGACCCAGGTTGCTGAGGATTCAGAAACAGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTTATCCTTGGAACAGGCACGTCAGAGGCCCTTGTTAAAATATGGGATGTAAAAAGTCAGAAAAACGTGGCCAAATTTGATGGACATGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCATATGATTCAGACACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTCGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGCGTGAAATCTGAATGGAATTGCATCAAAACTCTTCCAGATTTGTCTGGCACAGGGAAAGCAACTTGTCTTAAATTTGGACCGGATGCAAAATACTTAACCGTCGGGTCAATGGATCGGAATCTTCGAATTTTTGGTGTGCCTGGGGAAGATGGCGCCATGGAGACATGA 1794 44.09 MEKRTEIINQRRRACKLIDQQLKLPVAVRCLGKSCSAAAGLVNRISPAKMNCSISGEIPEEPVVSRNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFSSNAAAVNVNGKRGLSSQSPISMDFDEFLCSNLRFFVFSVNEDEELGPDGKKIRPGISDAVISELTECNAALSQQRKRRQIPATLVPVEALENYTQISSHPLHKTSKPGIMSLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNDFFVTASLDNTWCFYELASGLCLTQVAEDSETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSDTPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTLPDLSGTGKATCLKFGPDAKYLTVGSMDRNLRIFGVPGEDGAMET* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2936462 2949971 - Chy6G109640.1 Chy06g00436 228145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00436 597 CDD WD40 299 586 - -
Chy06g00436 597 Coils Coil 162 182 - -
Chy06g00436 597 CDD RING-Ubox_PRP19 52 103 - -
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 459 - -
Chy06g00436 597 PANTHER PRE-MRNA-PROCESSING FACTOR 19 30 596 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 367 IPR001680 GO:0005515
Chy06g00436 597 Pfam Prp19/Pso4-like 113 178 IPR013915 -
Chy06g00436 597 Pfam WD domain, G-beta repeat 548 586 IPR001680 GO:0005515
Chy06g00436 597 Pfam WD domain, G-beta repeat 461 497 IPR001680 GO:0005515
Chy06g00436 597 Pfam WD domain, G-beta repeat 330 366 IPR001680 GO:0005515
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 465 IPR001680 GO:0005515
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 506 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 415 456 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 283 325 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 328 367 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 373 412 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 546 587 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 500 539 IPR001680 GO:0005515
Chy06g00436 597 SMART WD40_4 459 497 IPR001680 GO:0005515
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 335 367 - -
Chy06g00436 597 Gene3D - 274 588 IPR015943 GO:0005515
Chy06g00436 597 SUPERFAMILY RING/U-box 50 102 - -
Chy06g00436 597 SUPERFAMILY WD40 repeat-like 292 586 IPR036322 GO:0005515
Chy06g00436 597 SMART Ubox_2 49 115 IPR003613 GO:0004842|GO:0016567
Chy06g00436 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 109 IPR013083 -
Chy06g00436 597 ProSiteProfiles U-box domain profile. 45 119 IPR003613 GO:0004842|GO:0016567
Chy06g00436 597 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00436 Chy-Chr6:2936462 Chy10g00679 Chy-Chr10:13219221 2.34E-15 dispersed
Chy12g01177 Chy-Chr12:16628998 Chy06g00436 Chy-Chr6:2936462 7.21E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00436 K10599 - csv:101204424 1026.93