Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00453 ATGAGAGCAAAAGACTGGATTGACGAACGAATTTTTTTGCTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTGGATGAAATGGCTCATTCATCAGATTCTTTGGCAACTCGAGACTATTCAGCGAGTGGTTTTTCATCCCGAACTGGTGGCGAGGTGGAACAAAAGGTTGATAATGGGAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCGCTTCATGTATTTGAAGGAATAGATATCGCTGCTGTAATTTCTAGGATAAAAGCTTCCTTTTCAACCAGATATGAACAAAATAGGCGCCAATCACAAAGCGATGTTGTGCCTACTATGTCCATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTGCACGGTTTAGGAAGATATGTCGAGGCCGCAAAATCGTGCAAACTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGACTGTAAATTGCAAGAGACACTAACGAAGGCTGTTGATTTACTTCCAGAATTGTGGAAATCTGCTGGTTCTCCACAAGAATCTATCTTGTCTTATAGGCGTGCGCTTCTCTATCAATGGAATCTAGAAATGGAAGCCAGATCAAGAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCAAATCTTCGTTCACAGATGGATAGCTCGTTCGTGCCAAGAAATAATATGGAAGAGGCCATTCTTTTGTTAATGGATCTGATGAGAAAATATACACTTGGATTGATTGTATGGGATCCATCAATAATAGAACATCTCTCCTTTGCACTTTCTGTGTCAGGGGAATTTGGAGCTCTAGCTAGTGAGGTTGAACAATTGCCTCCTGGAATTATAGGAAGAAAAGAAAAATACTGTATCCTAGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAATGTGGACTGCATGTTGGAACTGTTGCTGGCTTCTAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGGTCTACACAATGAGAGTTCTTTCACAGCTGCATGGTAAATGCATCCAATTGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAGTTAGTTGCTTCAGATTCTCAGAAAACATTGAAGCAATCTGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTCGAATATGCCGAACAGAGGAAGCTGGATTTTGCTCTATATTATGCAAAGCAACTAGTGAAACTCGAGGCAGGCTCTAGCCTGAAGTCTTATGTATTGTTGGCGAGAATCTTGTCTGCCCAAAAATGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAGCTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAAGGCCAGTTAAAAAACGGTATAGAAACGTATAGTCATCTTCTTGCTATAATTCAAGTCCAGAACAAAAGTAGTGGAAAGATGCTTCCAAAGGATGTAAGAAAATATGATAGAAGTTTAGAAGTAGATACATGGCATGACTTAGCCAATATCTACACAGGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTGTCAAAATTGCAAGCAATCGATCCATATTCTGCTTCCAAGTGGCATTCCACAGGTTTACTCTACGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGTCATGTTCCCAGCTTGATATCCACTGCCCGTCTTCTCCAACAGCTAGGCGGTAGTCAGTCGATTCCTGTGGTAAGAAGCTTGCTAACCGATGCCCTTCGACTAGATCGTGCAAATCCATCTGCGTGGTACAGTCTTGGGATGCTATATAAAGCTGACACTGGGGCATCGGCATTGGAGGTTGCTGAATGCTTTGAGGCTGCATCTCTACTTGAAGAGTCGGCACCGGTTGAACCTTTCAGAAGATGA 2199 41.7 MRAKDWIDERIFLLKSKFRKMINCIRSGDQLRVDEMAHSSDSLATRDYSASGFSSRTGGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASFSTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLHGLGRYVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPQESILSYRRALLYQWNLEMEARSRIEKEFAIFLLYSGCDASPPNLRSQMDSSFVPRNNMEEAILLLMDLMRKYTLGLIVWDPSIIEHLSFALSVSGEFGALASEVEQLPPGIIGRKEKYCILALCYYGEGKSLVALNLLKNFLSNIENVDCMLELLLASKLCGENLVCLDEGVVYTMRVLSQLHGKCIQLASVANCLLGVLLSAMSKLVASDSQKTLKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSLKSYVLLARILSAQKWFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQNKSSGKMLPKDVRKYDRSLEVDTWHDLANIYTGLSQWRDAEICLSKLQAIDPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTARLLQQLGGSQSIPVVRSLLTDALRLDRANPSAWYSLGMLYKADTGASALEVAECFEAASLLEESAPVEPFRR* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3021428 3025011 - Chy6G109810.1 Chy06g00453 228162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00453 732 Pfam Tetratricopeptide repeat 626 651 IPR019734 GO:0005515
Chy06g00453 732 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Chy06g00453 732 SMART tpr_5 585 618 IPR019734 GO:0005515
Chy06g00453 732 SMART tpr_5 531 564 IPR019734 GO:0005515
Chy06g00453 732 SMART tpr_5 495 528 IPR019734 GO:0005515
Chy06g00453 732 SMART tpr_5 153 186 IPR019734 GO:0005515
Chy06g00453 732 SMART tpr_5 619 652 IPR019734 GO:0005515
Chy06g00453 732 MobiDBLite consensus disorder prediction 47 68 - -
Chy06g00453 732 Gene3D Tetratricopeptide repeat domain 427 568 IPR011990 GO:0005515
Chy06g00453 732 MobiDBLite consensus disorder prediction 47 62 - -
Chy06g00453 732 SUPERFAMILY TPR-like 532 701 IPR011990 GO:0005515
Chy06g00453 732 Gene3D Tetratricopeptide repeat domain 569 727 IPR011990 GO:0005515
Chy06g00453 732 PANTHER OS10G0471400 PROTEIN 13 731 - -
Chy06g00453 732 SUPERFAMILY TPR-like 157 559 IPR011990 GO:0005515
Chy06g00453 732 PANTHER PROTEIN NPG1 13 731 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00453 Chy-Chr6:3021428 Chy07g00533 Chy-Chr7:4417752 0 dispersed
Chy03g01596 Chy-Chr3:17943869 Chy06g00453 Chy-Chr6:3021428 0 transposed
Chy04g01101 Chy-Chr4:17045098 Chy06g00453 Chy-Chr6:3021428 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00453 K21843 - csv:101206105 1419.45