Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00459 ATGGCCACCTCTGTAAAGGGCCTCTTAAAAGGATTAAGATACATTTCACAGATTTTCGATGAGAAAGAACCAGAAATGCAGATTGGTCTTCCTACTGACGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCTTCTGGGAATCAAAACAATACACCTACTTGGATGAACGAGTTTAAATCTTCACCAAAAACTCAAAACTCAAACGATTTGGTTAGTTCTATTGGGGAACTTGATCTTACTTCTACTAATATCCCCACTCAAGAGTCTGGAGACCTAGATGCGCAAAAGGCAAGTCGAGCACCAAGGTCGAAACGCCAAACATCGTCCGAGTCTTCGTCAGGTCTAGACTCTTCATCTAATCGGCGAAGCTCAGAGAAGGGATCTAGACGACAACGCTCATCATGCCCTTCAGGTGACTCTGGTCCTCAGGAAGGTAGTTCTCGAAGTTCACGACGTCGGCGTGGTGAATCAAGCACAGAAAATCCTATCCCAAAACACTCGCATCGGAGGAAATCTAAGGGATCGTCTGACGGTGGTGAATCGACGAGATCTTCAAGATCAAGAGATAATAACTCCTTAACAGACATACCTCTCCCAATATTGGAACCCGTGGATGAAGAGAAAGGATGA 633 44.71 MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPTWMNEFKSSPKTQNSNDLVSSIGELDLTSTNIPTQESGDLDAQKASRAPRSKRQTSSESSSGLDSSSNRRSSEKGSRRQRSSCPSGDSGPQEGSSRSSRRRRGESSTENPIPKHSHRRKSKGSSDGGESTRSSRSRDNNSLTDIPLPILEPVDEEKG* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3075672 3076619 - Chy6G109870.1 Chy06g00459 228168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00459 210 Pfam P21-Rho-binding domain 27 62 IPR000095 -
Chy06g00459 210 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 207 - -
Chy06g00459 210 CDD CRIB 26 62 - -
Chy06g00459 210 MobiDBLite consensus disorder prediction 102 122 - -
Chy06g00459 210 MobiDBLite consensus disorder prediction 179 195 - -
Chy06g00459 210 SMART PBD_5 28 62 IPR000095 -
Chy06g00459 210 MobiDBLite consensus disorder prediction 40 210 - -
Chy06g00459 210 MobiDBLite consensus disorder prediction 147 166 - -
Chy06g00459 210 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 207 IPR044510 -
Chy06g00459 210 MobiDBLite consensus disorder prediction 44 94 - -
Chy06g00459 210 Gene3D CRIB domain 24 71 IPR036936 -
Chy06g00459 210 MobiDBLite consensus disorder prediction 131 146 - -
Chy06g00459 210 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00459 - - - csv:101211802 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00459 Chy-Chr6:3075672 Chy11g01857 Chy-Chr11:24820046 7.39E-07 dispersed
Chy06g00459 Chy-Chr6:3075672 Chy12g01044 Chy-Chr12:15635959 6.71E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00459 Chy_Chr06 FPKM 5.847937 6.335925 6.83901 6.069324 42.752422 44.815289 40.019501 2.267091 2.418129 2.511231