Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00466 ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTCCATGCATCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGTCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGGTTAGTTACACAAAGAAGAAGCGAAAGCGGCCGTTGGGACCGCCGCCGTCGCGCTCGGGTGCTAGCAGTTGTAGTGAAACTGCAAATTTCTTGGGAAAAAACTTGCAAGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGAACATTCAGCGCGATAGCTATGCATCATATGTTGGACACTACCCAATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA 795 52.2 MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSETANFLGKNLQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3114042 3122237 - Chy6G109940.1 Chy06g00466 228175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00466 264 ProSiteProfiles ALOG domain profile. 23 150 IPR006936 -
Chy06g00466 264 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE 13 154 - -
Chy06g00466 264 MobiDBLite consensus disorder prediction 1 25 - -
Chy06g00466 264 Pfam Splicing factor 3B subunit 10 (SF3b10) 182 259 IPR009846 -
Chy06g00466 264 MobiDBLite consensus disorder prediction 142 168 - -
Chy06g00466 264 PANTHER PROTEIN G1-LIKE2 13 154 IPR040222 -
Chy06g00466 264 MobiDBLite consensus disorder prediction 1 23 - -
Chy06g00466 264 Pfam ALOG domain 16 136 IPR006936 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00466 - - - csv:101212284 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00227 Chy-Chr2:1516903 Chy06g00466 Chy-Chr6:3114042 5.58E-56 dispersed
Chy04g01085 Chy-Chr4:16523748 Chy06g00466 Chy-Chr6:3114042 2.89E-77 dispersed
Chy06g00466 Chy-Chr6:3114042 Chy11g01427 Chy-Chr11:21009893 5.72E-55 dispersed
Chy12g00093 Chy-Chr12:955068 Chy06g00466 Chy-Chr6:3114042 4.99E-44 dispersed
Chy02g00206 Chy-Chr2:1387970 Chy06g00466 Chy-Chr6:3114042 1.73E-60 transposed
Chy07g00028 Chy-Chr7:246881 Chy06g00466 Chy-Chr6:3114042 5.12E-55 transposed
Chy12g00322 Chy-Chr12:3475070 Chy06g00466 Chy-Chr6:3114042 3.15E-77 transposed
Chy12g00452 Chy-Chr12:5618312 Chy06g00466 Chy-Chr6:3114042 1.70E-43 transposed
Chy02g00059 Chy-Chr2:439096 Chy06g00466 Chy-Chr6:3114042 1.05E-73 transposed
Chy04g01084 Chy-Chr4:16476062 Chy06g00466 Chy-Chr6:3114042 2.06E-80 wgd
Chy05g01230 Chy-Chr5:16709219 Chy06g00466 Chy-Chr6:3114042 2.40E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g723 . . . . . . . . . . . . Car06g01135 . . Cpe08g00337 Cpe03g01519 Bhi01g00722 . . . Hepe05g1661 . . . . . . . . . . . Cone7ag0328 Cone4ag0332 Lsi05g01737 . . Cme06g00484 . . . . . . . . . Cmo06g01327 . . . . . . . . . . . . . . Cla05g00440 Cam05g0478 Cec05g0488 Cco05g0488 . Cmu05g0453 Cre05g0515 . Csa03g01202 Chy06g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003491 3 3 2 3 1 1 2 1 1 2 1 1 1 2 2 1 0 2 2 0 2 1 1 1 1 1 1 3 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00466 Chy_Chr06 FPKM 11.461133 14.253855 11.265115 13.727099 15.095404 12.734441 12.708888 19.365572 17.866423 21.954321