Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00475 ATGAGCGACGGATTTAAGAGAGACTATCAAGTAATTGAAGAGCTTGGCCGGGGAAGATTTGGTACCGTTTTCCGATGTATTTCTAGATCTTGCGGTGGAAACTACGCCGTCAAAATCATCGACAAGCGTCGGATCTCGGCCGGTGATGAACTCGACGCGGAATGTCTTGTTAACGAGACGAAGATTCTTCATCTCCTTTACCCTCACCCTCACATTCTCGCGTTGCATAATCTCTACGAAGACGAATCTCACCTTCATATGGTTCTTGATCTTTGTTCTTCTTCCGACCTCCACCGTCGAATCACACTTCAGGTTTTTTCCGAAGCTGAGGCGGCTAGGATTATGTCACAACTGATGCACGCGGTGGCTCATTGTCACCGTCACGGCGTTGCGCATCGTGATATTAAACCAGACAATATTCTGTTCGACGAGTGGGATTCGGTGAAATTGGCGGATTTCGGATCGGCGGAGATGTTTAAGCAGGGAGAAGAGTCGATGAGCGGCGTCGTCGGAACGCCGTACTACGTAGCGCCGGAAGTTCTAGCCGGAAAAGACTACGGCGAAAAGGTTGACGTCTGGAGCGCCGGCGTGGTTTTGTATGTTATGTTAGCTGGTTTTCCTCCGTTTCATGGTGAATCGGTTGTTGAGATCTTTCACGCGGTGTTGCGAGCGAATTTGAGATTTCCGTCCAGGGTTTTCCATTCTGTATCTCCCTCGGCAAAAGACTTGCTTCGTAAAATGCTCTGTAAAGACGTTTCCAGAAGAATTTCCGCGGAACAAGTCCTCAGACATCCATGGATAACCAGGTACGTAGAAAACATGGCAGAAACGGAAGTAGGTGAAATTTTGCAGTAA 855 48.3 MSDGFKRDYQVIEELGRGRFGTVFRCISRSCGGNYAVKIIDKRRISAGDELDAECLVNETKILHLLYPHPHILALHNLYEDESHLHMVLDLCSSSDLHRRITLQVFSEAEAARIMSQLMHAVAHCHRHGVAHRDIKPDNILFDEWDSVKLADFGSAEMFKQGEESMSGVVGTPYYVAPEVLAGKDYGEKVDVWSAGVVLYVMLAGFPPFHGESVVEIFHAVLRANLRFPSRVFHSVSPSAKDLLRKMLCKDVSRRISAEQVLRHPWITRYVENMAETEVGEILQ* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3173791 3174992 + Chy6G110030.1 Chy06g00475 228184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00475 284 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Chy06g00475 284 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Chy06g00475 284 SUPERFAMILY Protein kinase-like (PK-like) 7 274 IPR011009 -
Chy06g00475 284 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00475 284 CDD STKc_CAMK 8 266 - -
Chy06g00475 284 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 4 274 - -
Chy06g00475 284 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00475 284 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 274 - -
Chy06g00475 284 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00475 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Chy06g00475 284 PIRSF ILK 4 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00475 - - K08794 csv:101210072 556.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01665 Chy-Chr1:22598960 Chy06g00475 Chy-Chr6:3173791 1.45E-21 dispersed
Chy02g01168 Chy-Chr2:8375612 Chy06g00475 Chy-Chr6:3173791 1.42E-10 dispersed
Chy02g01784 Chy-Chr2:19331307 Chy06g00475 Chy-Chr6:3173791 4.53E-113 dispersed
Chy06g00475 Chy-Chr6:3173791 Chy01g01115 Chy-Chr1:12734862 3.90E-70 dispersed
Chy06g00475 Chy-Chr6:3173791 Chy04g01827 Chy-Chr4:24499287 1.75E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71311 PF00069 Pkinase 2.60E-75 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00475 Chy_Chr06 FPKM 0.0 0.0 0.043462 0.17364 0.0 0.0 0.013712 0.254335 0.091922 0.223751