Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00479 ATGGAGTACTCTGTATACTTCTCCCCGATTTCTGATTTCTCATCCGAATCATCTTTCGGTTCACCCGAATCCTCCTTCACCAATTTCGACCATAATTTTCTCCCTTTCAATGTAAATGACTCAGAGGAAATGTTTCTTTATGGCCTAATCTCCGAGGGCACATACGAATCATCCTATACCAGTATTGGAACCGTCCAAGTGAAGGAAGAGGAAGTCGATTCCATCGGAGAAGAAAGCCCAAAGAAAGAGAGGGCTTATAGAGGAGTTCGCAGCCGTCCATGGGGGAAATTTGCGGCGGAAATTAGAGATTCCTCTAGACAAGGTAAAAGGGTATGGTTGGGAACTTTCGATAGTGCTGAAGCCGCCGCTTTGGCTTACGATCAAGCTGCCTTTTCGTTGAGGGGCGCTGCCGCAATTCTCAATTTTCCTGTCGACAGAGTTAGAGAGTCTCTCGAAGAGATGAACGCCGGCAGTGGGGGCAGCGGTGATAGTTTAGCCGAAGACGGCGGCTCTCCGGTAGTGGCGTTAAAAAGAAAACACTCGATTAGAAGGAAAGCCATAGGTAAAAAGAGCAAAGAGAGAGATGTGAGGATTCAAAATGTGGTGGTTTTGGAAGATTTAGGGCCAGAGAAATTGGAAGAACTTTTGGGCTATTCTCAAAGTGATAGCCCTTCTTGTTCTTTCTAA 687 46.0 MEYSVYFSPISDFSSESSFGSPESSFTNFDHNFLPFNVNDSEEMFLYGLISEGTYESSYTSIGTVQVKEEEVDSIGEESPKKERAYRGVRSRPWGKFAAEIRDSSRQGKRVWLGTFDSAEAAALAYDQAAFSLRGAAAILNFPVDRVRESLEEMNAGSGGSGDSLAEDGGSPVVALKRKHSIRRKAIGKKSKERDVRIQNVVVLEDLGPEKLEELLGYSQSDSPSCSF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3204245 3204931 - Chy6G110070.1 Chy06g00479 228188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00479 228 PANTHER DNA-BINDING DOMAIN 28 218 IPR044808 GO:0003700|GO:0009873
Chy06g00479 228 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Chy06g00479 228 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Chy06g00479 228 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Chy06g00479 228 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Chy06g00479 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 218 - -
Chy06g00479 228 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Chy06g00479 228 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Chy06g00479 228 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Chy06g00479 228 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01512 Chy-Chr1:20800829 Chy06g00479 Chy-Chr6:3204245 4.06E-45 dispersed
Chy06g00479 Chy-Chr6:3204245 Chy02g00260 Chy-Chr2:1683362 1.75E-31 dispersed
Chy04g01070 Chy-Chr4:16050519 Chy06g00479 Chy-Chr6:3204245 1.14E-55 wgd
Chy05g00330 Chy-Chr5:3350035 Chy06g00479 Chy-Chr6:3204245 1.25E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18094 PF00847 AP2 2.60E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00479 K14516 - csv:101210326 382.104