Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00483 ATGTCGATGAATCCCTTTTGCGAGATTGCAATCGAGGAAGCTCTGCGTATCAAGGAGGCTGGCTTGGCCTCTGAGGTTGTGGCGGTCAGCATGGGCCCGGTTCAGTGCGTCGACACTCTCAGGACGGGCCTTGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTTTCCTCTATCTGTTGCGAAGATTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGGAAACAGGCTATTGATGATGATTGTAATCAAACGGGGCAGATGGTTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGAAGTGACAGTAGACAGAGAAGTGGATGATGGTCTCGAGACTCTTTGTTTGAACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAGTCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCTGATTTAGAGGTCGTTGAAGTGACGGAACCTCCGAAAAGAAAAGCGGGTATCATACTGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCGTGTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGAGCGCGAGATGGGTCGTGCGCTGGGCCATCTTCAAAAGCTTGTCGTGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACTAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTAAAAGAAGACAAGGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATTCCTGGTCATCCAGCTGCATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCTTAG 1170 45.73 MSMNPFCEIAIEEALRIKEAGLASEVVAVSMGPVQCVDTLRTGLAMGADRGIHVEATAPLFPLSVAKILKALVEVEKPGLLLLGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVVIDKEKQEVTVDREVDDGLETLCLNLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILRDSLADTDVSAGRVESEENDCSRKRARDGSCAGPSSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLKAEKNDLRKEKIILKEDKEKMEQQLKSIAIPSPGLIPGHPAAYHAASGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPPAA* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3237018 3242439 + Chy6G110110.1 Chy06g00483 228192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00483 389 Coils Coil 275 330 - -
Chy06g00483 389 SMART ETF_2 1 181 IPR014730 -
Chy06g00483 389 CDD bHLH_AtILR3_like 239 314 - -
Chy06g00483 389 Pfam Electron transfer flavoprotein domain 2 176 IPR014730 -
Chy06g00483 389 Gene3D - 237 318 IPR036638 GO:0046983
Chy06g00483 389 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 204 IPR012255 GO:0009055
Chy06g00483 389 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 204 - -
Chy06g00483 389 Pfam Helix-loop-helix DNA-binding domain 238 285 IPR011598 GO:0046983
Chy06g00483 389 Gene3D HUPs 1 212 IPR014729 -
Chy06g00483 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 302 IPR036638 GO:0046983
Chy06g00483 389 CDD ETF_beta 1 173 IPR033948 -
Chy06g00483 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 285 IPR011598 GO:0046983
Chy06g00483 389 SMART finulus 240 291 IPR011598 GO:0046983
Chy06g00483 389 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 125 145 IPR000049 GO:0009055
Chy06g00483 389 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA 1 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00483 Chy-Chr6:3237018 Chy11g00586 Chy-Chr11:6690012 1.05E-43 dispersed
Chy06g00483 Chy-Chr6:3237018 Chy02g00573 Chy-Chr2:3449042 1.04E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18097 PF01012 ETF 3.90E-42 CL0039 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00483 K03521 - csv:101210570 396.356