Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00490 ATGGAGGTAAACGCCATTCTAGAAGAGAAACTCAAAAAGATTCGATCGGTGGTCGGTCCTGACTTTCCGGATTCCTTTATTGAGCGGACGTTGTCGAGAAACGGCGGTGACCCTGATGAGGCTATTAAGTACATTCTCGAAAACCCTGGGTTTTTTGCCAGGCCACTGTCTGTTGTACGGACTGTCACTAGCACCGGTGCTCGAGTTTCGACACAGTTCATGCCGAAGGATTCTATGGAGTCGGAGGAGGAAGCGAAACCAACGGTACAAGTGAAGGAGGAACCGGGTTTAGGGCTCGAAGATAAGGGCATTGAGAATAGGGGAGTGAGCTCGGATCGTTCAAAGGTCACTGGAACGTCGAAAATGACACTTGACGAGTTTCTTAAACAGAATGTGATGAGCGATGAGGAGTATAGCAAGATCCTTAAGGAAATGGCGGCAGCGAAACCCAGTGCCAAGAATAATGTAAAGGAGGAACCAGTTGAGGCGATTGCGCAATCTGGTGCTGGTACAAATGCGAGGGTAAAAGAAGAACCAGATTTGGAGGTTAAGAACAGAGCATTTGCTAAAAAAGCAAGGTCGGAGACTGAAAATTTTGCAAAGTCGGTTTCAAGCAATTCAAGTGGCATGCAAAGGAATGGGACCTTGTCTAATGATGGGAGGTGCAAGATTGAAGATGGGGATTTCCCTATTGAGCCCGATTGGTTTTTGGTGGGAAGGACAGTGGTCACAGCCATGTCCACCACGAAAGGGAATAAATTAGCAGATAATGAAATTGTTAATTTTGCGTTTCCTTCTTCAAGTTCAAGATTCAATGCGCAATGGATTGTTCGCTTCTCAACTAAAAGAAGTGGAGAGATTGGTCGCCTACCAATGGAGTGGGCAAAATGTGTAGTTCCACTTGTCAACTCCCAGAAAGTTAAAATTCTTGGACGATGTATAGCTGCACCAGGAAACCTTCACATAATGCAAGAGATCCTTCTATATGTTAGCTTTTATATTCATAGTTTAGTATTCTCAGACATTGATACAGTTACATGGAAGCTGGAGGCTACGCACATTGACTCTACAATTTATCCTCTTCTTACCCTTTTTAAATTACTGAAAATCACACCGTACCAGAAGGCTGAATTTACACCAGAAGAACTTGATTCAAGGAAGCGTCTGCTGAAGCTTGAAGACGATCCAGATGAATCAACATCTATGCTACCTCTTGTGAAGCGAAGAAAGGGTTCCCAGCAATTTGCAGATCAAAACAAAGATGACCAAACTCTTAATGAATCATCACTGACTAAGCTTGTTGGTGCAGTAGATATGTATAATCTGGATGAAATGGAGCCTCCACCTACACTAACCTGTGATCTTAGGCCTTATCAAAAGCAAGCTCTATTCTGGATGTCTGAGTTGGAGAAGGGGATCGATGTTGAGAAGGCCGCACAAACCCTTCATCCATGCTGGTCAGCCTACCGTATCTGTGATGAAAGAGCAACCTCAATCTATGTAAACATTTTCTCTGGGGAATCAACTACAAAATTCCCAACTGCAACACAGATGGCAAGAGGAGGAATTCTCGCGGATGCAATGGGGCTTGGAAAGACGGTTATGACAATTGCTCTTATACTTGCGAGGATGGGCAAAGGATGCCCTGATAACCAAAAGTCCACAGTGAATAAGAATGTAACCACAGAGAAAAAAAGTCAGAAATCCACGACTAAAGCAAGGGGTGGCACCCTTATTGTTTGTCCAATGGCTTTGCTGGGTCAATGGAAGGAGGAACTTGAAATACATTCAGAGCCTGAAAGTATTTCCATATTTGTTCATTATGGTGGTGATAGAACTAACAACCCAGAGGTGCTATCAGGATATGATGTTGTATTGACAACGTATGGTGTCCTAACATCGGCCTATAAGAGTGATGGAGAGTTTAGTATTTACCACAGAGTCGATTGGTACAGAGTTGTGTTAGATGAAGCCCATACAATTAAATCATCAAAGACACAAACTGCACAGGCTGCCTTTACACTGAACTCATATTGTCGCTGGTGTCTTACTGGAACCCCCCTCCAGAATAACCTGGAAGACCTTTTCAGCCTGTTATGCTTCTTGCGAGTGGAACCGTGGTGCAATTGGGCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAAAATGGTGATCCTAGAGGCTTGAGATTGATCAAGGCTATCCTGAGGCCACTTATGTTGAGGAGAACTAAAGATACAAGTGATGCAAACGGAAGGCCTATTCTTGTTCTCCCTCCTACTGATATTCAAACCGTCATGTGTGAACAGTCTGAGGCTGAACATGATTTTTATGATGCACTTTTTAAGAAATCAAAAATCCAGTTTGACCAGTTTGTAGCACAAGGAAAGGTTCTCCACAACTATGCAAACATCCTCGAGCTCTTGCTTCGACTTAGGCAGTGTTGCAACCACCCATTTCTTGTAATGAGCCGAGGAGATTCACAACAATATGCCAACTTAAACAAGCTTGCAAGAAAGTTCCTTGAATCCAACACTAATTCTACAACAATGGAGCAGGCTGCACCAACTCGAGCATATGTCGAAGAGGTTGTTGAGTGCATTCGGCGAGGGGAAAACACTGAGTGTCCAATATGTTTGGAATTTGCTGACGATGCAGTGCTGACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCGAGCTGGAGGATCCCCACATGTGGGTTCTGCCCAATTTGTAGGCAAATGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAGCCCTTTCCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAATTGCTTGAATGCTTGGAGAGGATTAATCAGTTGGGTTCTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTACGTTTTTTGATCTCTTAGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAACATAGGGAAAGAGTTCTAAAGGAGTTCAGTGAAAGCAAGGAGATAAAGGTGATGCTGATTTCTCTAAAAGCTGGTGGGGTGGGATTGAATCTAACCGCAGCATCAAATGTCTTCATAATGGATCCATGGTGGAATCCCGCGGTTGAGGAACAAGCAATCATGAGGATTCATCGTATTGGTCAGAAGAGGACAGTCCGAGTCAGAAGATTCATTGTCAAGGACACAGTGGAGGAACGCATGCAACAAGTTCAAGCGAGAAAGCAACGGATGATCGCCGGTGCACTCACTGACGAGGAAGTTCGAACGGCCAGAATTGAAGAACTCAAGATGCTATTTAGATGA 3342 43.96 MEVNAILEEKLKKIRSVVGPDFPDSFIERTLSRNGGDPDEAIKYILENPGFFARPLSVVRTVTSTGARVSTQFMPKDSMESEEEAKPTVQVKEEPGLGLEDKGIENRGVSSDRSKVTGTSKMTLDEFLKQNVMSDEEYSKILKEMAAAKPSAKNNVKEEPVEAIAQSGAGTNARVKEEPDLEVKNRAFAKKARSETENFAKSVSSNSSGMQRNGTLSNDGRCKIEDGDFPIEPDWFLVGRTVVTAMSTTKGNKLADNEIVNFAFPSSSSRFNAQWIVRFSTKRSGEIGRLPMEWAKCVVPLVNSQKVKILGRCIAAPGNLHIMQEILLYVSFYIHSLVFSDIDTVTWKLEATHIDSTIYPLLTLFKLLKITPYQKAEFTPEELDSRKRLLKLEDDPDESTSMLPLVKRRKGSQQFADQNKDDQTLNESSLTKLVGAVDMYNLDEMEPPPTLTCDLRPYQKQALFWMSELEKGIDVEKAAQTLHPCWSAYRICDERATSIYVNIFSGESTTKFPTATQMARGGILADAMGLGKTVMTIALILARMGKGCPDNQKSTVNKNVTTEKKSQKSTTKARGGTLIVCPMALLGQWKEELEIHSEPESISIFVHYGGDRTNNPEVLSGYDVVLTTYGVLTSAYKSDGEFSIYHRVDWYRVVLDEAHTIKSSKTQTAQAAFTLNSYCRWCLTGTPLQNNLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENGDPRGLRLIKAILRPLMLRRTKDTSDANGRPILVLPPTDIQTVMCEQSEAEHDFYDALFKKSKIQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQQYANLNKLARKFLESNTNSTTMEQAAPTRAYVEEVVECIRRGENTECPICLEFADDAVLTPCAHRMCRECLLSSWRIPTCGFCPICRQMLRKTDLITCPSESPFRVDVEKNWKESSKVSKLLECLERINQLGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRTARIEELKMLFR* 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3299227 3304905 + Chy6G110180.1 Chy06g00490 228199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00490 1113 Pfam Zinc finger, C3HC4 type (RING finger) 876 915 IPR018957 GO:0046872
Chy06g00490 1113 SUPERFAMILY RING/U-box 864 921 - -
Chy06g00490 1113 CDD SF2_C_SNF 944 1071 - -
Chy06g00490 1113 ProSitePatterns Zinc finger RING-type signature. 891 900 IPR017907 -
Chy06g00490 1113 SMART helicmild6 977 1060 IPR001650 -
Chy06g00490 1113 CDD DEXDc_SHPRH-like 455 743 - -
Chy06g00490 1113 MobiDBLite consensus disorder prediction 552 573 - -
Chy06g00490 1113 Gene3D - 759 1113 IPR027417 -
Chy06g00490 1113 CDD RING-HC 876 915 - -
Chy06g00490 1113 Pfam HIRAN domain 239 330 IPR014905 GO:0003676|GO:0008270|GO:0016818
Chy06g00490 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 743 IPR027417 -
Chy06g00490 1113 SMART HIRAN_2 238 334 IPR014905 GO:0003676|GO:0008270|GO:0016818
Chy06g00490 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 1103 IPR027417 -
Chy06g00490 1113 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 376 1113 - -
Chy06g00490 1113 Pfam Helicase conserved C-terminal domain 949 1060 IPR001650 -
Chy06g00490 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1113 IPR001650 -
Chy06g00490 1113 CDD CUE 20 46 - -
Chy06g00490 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 869 925 IPR013083 -
Chy06g00490 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 705 IPR014001 -
Chy06g00490 1113 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 48 IPR015940 -
Chy06g00490 1113 Gene3D - 509 744 IPR038718 -
Chy06g00490 1113 SMART ultradead3 451 722 IPR014001 -
Chy06g00490 1113 Pfam SNF2-related domain 458 821 IPR000330 GO:0005524|GO:0140658
Chy06g00490 1113 MobiDBLite consensus disorder prediction 198 218 - -
Chy06g00490 1113 ProSiteProfiles Zinc finger RING-type profile. 876 916 IPR001841 -
Chy06g00490 1113 MobiDBLite consensus disorder prediction 194 221 - -
Chy06g00490 1113 PANTHER DNA REPAIR PROTEIN RAD5B 376 1113 - -
Chy06g00490 1113 Pfam CUE domain 20 48 IPR003892 GO:0043130
Chy06g00490 1113 SMART ring_2 876 915 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00490 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] - csv:101214691 2180.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00490 Chy-Chr6:3299227 Chy12g00732 Chy-Chr12:11066198 0 dispersed
Chy06g00490 Chy-Chr6:3299227 Chy04g01770 Chy-Chr4:24044194 1.08E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00622 . 80 874 RAD5/RAD16-like Gene Family AT1G05120 58.4 2.7e-265 911.8
Chy02g00318 . 293 1238 RAD5/RAD16-like Gene Family AT1G11100 52.6 6.8e-242 834.3
Chy02g00318 . 406 1137 RAD5/RAD16-like Gene Family AT1G50410 50.7 6.4e-190 661.4
Chy02g00318 . 397 1236 RAD5/RAD16-like Gene Family AT1G61140 60.4 1.5e-268 922.9
Chy12g00732 . 1 1041 RAD5/RAD16-like Gene Family AT5G22750 70.0 0.0e+00 1431.4
Chy06g00490 . 234 1112 RAD5/RAD16-like Gene Family AT5G22750 55.5 4.3e-294 1007.7
Chy06g00490 . 129 1114 RAD5/RAD16-like Gene Family AT5G43530 67.5 0.0e+00 1330.1
Chy12g00732 . 128 1039 RAD5/RAD16-like Gene Family AT5G43530 54.6 5.0e-284 974.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18098 PF00176 SNF2_N 3.10E-82 CL0023 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00490 Chy_Chr06 FPKM 9.862319 11.140296 6.043938 7.111241 8.885839 8.241446 9.135307 7.262363 7.91334 8.33304