Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00491 ATGTCCGACGCAGAGAGAAAAACTGCCACCACCGTTGCGCCCACGAGGCTGCAGAGCCAGGCTCCGGCATCGATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGTTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGGGGTTGTCCGGGGTTGATCATCATCATCATCACCACCCGGCCGCGATTAATTCACCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGAAGCCGAGAAGATGACGACGACGACAACAATCGAGACGAGCCAAAAGAAGGCGCCGTGGAAGCCGGAACACGGAGGCCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCAATCTTTGTCACACGTGATAGTCCCAACGCTCTCCGGAGCTACGTCTTAGAGGTCGCTGCCGGATCCGACGTGGCCGACTCCATCGCTCAATTCGCTCGTAAACGCCAGCGTGGCGTTTGTGTTCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCAGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTCGAGATTCTTTCGTTAACCGGTGCTTTTTTACCCGGTCCAGCTCCACCTGGCTCAACGGGTCTCACAGTTTACTTGTCGGGGGGTCAGGGCCAGGTCGTCGGTGGGAGCGTGGTTGGATCGCTTGTGGCTGCCGGTCCTATTATGGTAATTGCAGCTACTTTTGCTAATGCAACTTATGAAAGGTTGCCTCTTGAAGATCCCGATGAACATGAAGTTGGAAGTGGCTCCGCCTCACACGGTGGTCCTAGAAGTCCTCCGCCGGAAATTAGAGCCACTGGAGGAGGGCAGATGCCAGCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGCGTTCAGCTTGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA 1116 54.3 MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSVPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPVGLSGVDHHHHHHPAAINSPIFKQSDENSGGSREDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDEHEVGSGSASHGGPRSPPPEIRATGGGQMPAGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3305545 3311519 + Chy6G110190.1 Chy06g00491 228200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00491 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 292 IPR005175 -
Chy06g00491 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 122 371 - -
Chy06g00491 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 305 - -
Chy06g00491 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 122 371 IPR014476 GO:0003680
Chy06g00491 371 ProSiteProfiles PPC domain profile profile. 176 315 IPR005175 -
Chy06g00491 371 MobiDBLite consensus disorder prediction 103 173 - -
Chy06g00491 371 CDD DUF296 180 262 IPR005175 -
Chy06g00491 371 Gene3D - 179 309 - -
Chy06g00491 371 MobiDBLite consensus disorder prediction 303 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00491 Chy-Chr6:3305545 Chy11g01989 Chy-Chr11:25805445 1.03E-67 dispersed
Chy10g00525 Chy-Chr10:11822713 Chy06g00491 Chy-Chr6:3305545 4.05E-75 transposed
Chy05g00341 Chy-Chr5:3529987 Chy06g00491 Chy-Chr6:3305545 9.04E-69 wgd
Chy05g01223 Chy-Chr5:16655920 Chy06g00491 Chy-Chr6:3305545 1.49E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00491 - - cpep:111790297 536.569