Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00495 ATGAAACTTTCTCGTCTTAATTCCCTCCGCCGAGTCCAGTCCGGTGAGCTTATCGTGAAGCACCCCGACGACCACGATGATTCCAAACGGCCTCAATTTCCTCTTGATTCCACCTCTTACAAAATCATCGACGAAATTGGTGTCGGTGTCAGCGCCGTCGTGTATAAAGCCATCTGCATTCCTATGAACTCTGCAGTTGTGGCCATCAAAGCCATTGACCTCGATCGATCACGAGCGGATTTCGACGACATCCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAACATTCTAAATTCTCATTGCTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTCATGCCGTTCATGTCCGCTGGATCTTTACAGTCCATTATTACGTCCTCGTTTCCCGATGGCTTGCCGGAGCCCTGCATTGCCATTGTTCTTCGGGAAATTCTGCACGCTCTTTCTTACCTCCACGACCAAGGCCATCTCCACCGCGATATTAAAGCCGGCAACATTCTTATAGACTCAAATGGGTCGATCAAGCTTGCTGATTTTGGAGTTTCCACGTCGATTTTCGAGTCGAATTCAAAACAGGGGATGTCGATTTCTCCATTGTCGACGTCTATGATGCTGAAGGAAGTCGCCGGAACGCCATATTGGATGGCACCGGAGGTGATTCACTCGCACAATGGGTATAGTTTGAAAGCAGATATATGGTCTTTTGGAATCACAGCGTTGGAATTAGCCCATGGACGACCTCCCCTATCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTATGAGAATCACCATAACAGCAAAAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCGTCTTGCCTGGATCCGGAGCCATCGAGAAGACCCTGCGCTGAGAAATTGCTCAAACATCCATTCTTCAAAAACAGCAAGGGGCCTGATCTTCTCGTAAAAACTATATTACAAGGATTGCCGAGCGTCGAAGAGCGATTCAAATTGGGTAAATTACAGCGATTGCCGTCGATGAAAACCGAGGAAGAAGAGGAAGAAGAATTAGAGAAAGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAATGAAGATGGGTTAGAGCTAGACCCTGTTTTTCCAGGGGAAGAATGTTCGATCATGGAGGAGAAGGGTTCGGGGAATTCGAGCGAGTGCTGTTCGGGGCTGTCGGATCTGAGTTCACCAGGGGGGAATGAGAGGGGCGGCGGCAGCAGCGGGGGTGGAGGGGAGGAGGAGGTTGTTGACAGAGAATCGATAGTGGGAGGATTGATGGCGCTGAAAAGGAGCTTAGATGAACAGAGAAGGGCGGTGGGAAGTTTGATAGAATTGATGGAAGGGGAAAAAGTGGGAGAGATGAGCAGAGAGGAGCAAATGGGGAGATTGATGGAGAAGATGACGAGGGAATTGGAGAATGAGAGGAGGAGGAACTTTGAATTAGAGATGGAGTTGGAATTTCTTAGGCTTCAAATTTCTGCTGTTCATAATAATAACGATGGTGGTGCTTCGACCGCCATCAACAACTGA 1593 47.83 MKLSRLNSLRRVQSGELIVKHPDDHDDSKRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNSHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAIVLREILHALSYLHDQGHLHRDIKAGNILIDSNGSIKLADFGVSTSIFESNSKQGMSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHHNSKNKNKFSKGFKELVASCLDPEPSRRPCAEKLLKHPFFKNSKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGEECSIMEEKGSGNSSECCSGLSDLSSPGGNERGGGSSGGGGEEEVVDRESIVGGLMALKRSLDEQRRAVGSLIELMEGEKVGEMSREEQMGRLMEKMTRELENERRRNFELEMELEFLRLQISAVHNNNDGGASTAINN* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3358171 3359763 - Chy6G110230.1 Chy06g00495 228204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00495 530 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Chy06g00495 530 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00495 530 MobiDBLite consensus disorder prediction 398 434 - -
Chy06g00495 530 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00495 530 Coils Coil 478 512 - -
Chy06g00495 530 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 24 520 - -
Chy06g00495 530 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 24 520 - -
Chy06g00495 530 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Chy06g00495 530 MobiDBLite consensus disorder prediction 399 423 - -
Chy06g00495 530 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g00495 530 Coils Coil 353 373 - -
Chy06g00495 530 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Chy06g00495 530 Gene3D Transferase(Phosphotransferase) domain 1 122 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00495 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101215648 923.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy05g00345 Chy06g00495 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00495 Chy-Chr6:3358171 Chy07g00059 Chy-Chr7:518162 1.05E-57 dispersed
Chy04g01331 Chy-Chr4:19856048 Chy06g00495 Chy-Chr6:3358171 1.50E-105 transposed
Chy06g02217 Chy-Chr6:26332925 Chy06g00495 Chy-Chr6:3358171 8.34E-107 transposed
Chy09g00338 Chy-Chr9:2955913 Chy06g00495 Chy-Chr6:3358171 1.85E-109 transposed
Chy05g00345 Chy-Chr5:3557828 Chy06g00495 Chy-Chr6:3358171 9.22E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00059 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 4.5e-223 771.2
Chy07g00059 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.8 7.7e-231 797.0
Chy07g00059 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Chy09g00338 . 1 641 MAP Kinase Kinase Kinase Kinase AT5G14720 68.3 1.3e-251 865.9
Chy06g02217 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 8.9e-246 846.7
Chy06g02217 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.0 2.2e-246 848.6
Chy09g00338 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.3e-149 526.9
Chy04g01331 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 1.6e-131 466.8
Chy06g02217 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 9.0e-119 424.5
Chy04g01331 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 2.3e-216 748.8
Chy09g00338 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.6e-103 371.7
Chy04g01331 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 2.5e-87 319.7
Chy06g02217 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 4.9e-75 278.9
Chy06g00495 CCT 32 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 7.5e-140 494.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71312 PF00069 Pkinase 1.20E-59 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00495 Chy_Chr06 FPKM 29.892395 31.811754 28.144493 27.152458 30.616039 35.890129 31.61046 36.708427 35.668106 34.073036