Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g00518 ATGGCGACGGCAACTGCGACAGTGAAATTACCCACTGAGAAGCTCATGGGTTGCTTGACATGCCCTCTTTGCCATAACTTGTTTACTAATGCTACCACCATATCTGAATGCCTCCACACATTTTGCAGGGATTGTATATATGAGAAGATAGCTGAAGAGGAATTAGAGGGCTGTCCTGTCTGCAACACAAATTTAGGGGGTGTGCCATTGGAGAAACTCAGGGCAGACCACACAATGGATGATTTAAGGGAAAAGATATTTTCTTGTAAAGGGAGGAAGGAGAAGGAACATGAGAAAACACAGTTGTCGTCCTCATCCTCAGTTTCATTGCCTACCAAAAGAAAAGAGGGACCGGTCTCTATTTTAGAGATTGACAATACGTACACAACTTCTGACTCTGGAACATCAAAAAAGTTGTCGGCATCTACAGCAAAAGAAAGCTTAGCCGAGCAACAATACCTTTCCACCATGATTGATCACACAAAACTCATCTTTGATCAAAATAAGCAGAACAATGGCCAGGTAATGGAAAGAATAATTGATGATTTGAATAAAAAGGAAACAAGTGTAACATGCTCAAATGATTGTAAGATACAAGATACTCTCACTAAGGCAGAAACAATCCAGATTGATGATAACTATTGTAACGTTCAAGAACGTGGTTACAAGCCAATTATGGATAGAGTTGAAAGAGAATCTCATGAAACTTCAGGTTCTATTGAACATGGAAAATTGCAGGATGTTTCAAGGGAAAGAAGATTAGCTAGCAGCAACGGATCCTCTGGTAAATTACAAGATCCTTTAGGTGACATTGATGCAGATGGGCAATGCAACAAGTCATCAAGTCCTATATGGTTTCAACTAGTTGCTTCTGATCACCAGGAAGGAAATGAGCCTTTGCCTCAGATCTCCTCAAACTACTTGAGGGTCAGCGATGGCAGTATACCTGTGTCATTTATCCAGAAATATCTTGCGAAGAAACTAGGTCTTGCTAGTGAGATTGAGGTGGAAATCTCATTCAAGGGTCAACCAGTGAGCTCCACATTGCATCTACATGACATTGTAGAACTGTGGCGACATACAACCACAAAAGTAGAACTAATACAAATATCTGTGGGCAGCTCGGCCAAGGATTTTGTGATGGTTCTATCTTATGGTCGGAAGTGTTATCACCCTGGAAAATTCACAAATATTTGTGCTCACTTAAACAATGGTGTTCAATAA 1224 40.52 MATATATVKLPTEKLMGCLTCPLCHNLFTNATTISECLHTFCRDCIYEKIAEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKIFSCKGRKEKEHEKTQLSSSSSVSLPTKRKEGPVSILEIDNTYTTSDSGTSKKLSASTAKESLAEQQYLSTMIDHTKLIFDQNKQNNGQVMERIIDDLNKKETSVTCSNDCKIQDTLTKAETIQIDDNYCNVQERGYKPIMDRVERESHETSGSIEHGKLQDVSRERRLASSNGSSGKLQDPLGDIDADGQCNKSSSPIWFQLVASDHQEGNEPLPQISSNYLRVSDGSIPVSFIQKYLAKKLGLASEIEVEISFKGQPVSSTLHLHDIVELWRHTTTKVELIQISVGSSAKDFVMVLSYGRKCYHPGKFTNICAHLNNGVQ* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3493793 3495650 - Chy6G110460.1 Chy06g00518 228227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g00518 407 SMART ring_2 21 61 IPR001841 -
Chy06g00518 407 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 7 388 - -
Chy06g00518 407 MobiDBLite consensus disorder prediction 230 251 - -
Chy06g00518 407 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 388 IPR044807 GO:0004842
Chy06g00518 407 Gene3D - 269 369 - -
Chy06g00518 407 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Chy06g00518 407 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Chy06g00518 407 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Chy06g00518 407 MobiDBLite consensus disorder prediction 230 273 - -
Chy06g00518 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 110 IPR013083 -
Chy06g00518 407 SUPERFAMILY RING/U-box 15 84 - -
Chy06g00518 407 MobiDBLite consensus disorder prediction 92 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g00518 K16277 DRIP; E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] - csv:101216620 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00518 Chy-Chr6:3493793 Chy07g01536 Chy-Chr7:19607780 5.81E-11 dispersed
Chy11g01102 Chy-Chr11:16096950 Chy06g00518 Chy-Chr6:3493793 7.78E-62 transposed
Chy05g00410 Chy-Chr5:4356779 Chy06g00518 Chy-Chr6:3493793 5.06E-74 wgd
Chy05g01203 Chy-Chr5:16490120 Chy06g00518 Chy-Chr6:3493793 1.54E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g00518 Chy_Chr06 FPKM 74.53965 79.695755 214.524796 200.648575 130.362808 128.597687 116.110382 168.481384 179.92247 160.984772